Hb_002053_080

Information

Type -
Description -
Location Contig2053: 92790-96036
Sequence    

Annotation

kegg
ID vvi:100264679
description pentatricopeptide repeat-containing protein At4g21300
nr
ID XP_012075525.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Jatropha curcas]
swissprot
ID Q9STE1
description Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
trembl
ID A0A067KIM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09141 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21169: 95356-96288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Jatropha curcas]
2 Hb_000343_120 0.0733298597 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
3 Hb_009545_100 0.0744921959 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
4 Hb_001199_100 0.075463631 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
5 Hb_009175_020 0.0782698458 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
6 Hb_000116_500 0.0785518988 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
7 Hb_000084_120 0.0800308281 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
8 Hb_002027_290 0.0816078875 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
9 Hb_005065_010 0.0829474262 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
10 Hb_003605_110 0.083300052 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
11 Hb_010417_050 0.0833768607 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
12 Hb_003988_010 0.084152915 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
13 Hb_000011_230 0.0845144927 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
14 Hb_025194_040 0.0881301819 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
15 Hb_000028_280 0.0894635396 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
16 Hb_003253_040 0.0912981844 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
17 Hb_001195_320 0.0924773996 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
18 Hb_123903_010 0.0930754607 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
19 Hb_000033_030 0.0936346485 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
20 Hb_016898_010 0.0938512273 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]

Gene co-expression network

sample Hb_002053_080 Hb_002053_080 Hb_000343_120 Hb_000343_120 Hb_002053_080--Hb_000343_120 Hb_009545_100 Hb_009545_100 Hb_002053_080--Hb_009545_100 Hb_001199_100 Hb_001199_100 Hb_002053_080--Hb_001199_100 Hb_009175_020 Hb_009175_020 Hb_002053_080--Hb_009175_020 Hb_000116_500 Hb_000116_500 Hb_002053_080--Hb_000116_500 Hb_000084_120 Hb_000084_120 Hb_002053_080--Hb_000084_120 Hb_000166_130 Hb_000166_130 Hb_000343_120--Hb_000166_130 Hb_000035_290 Hb_000035_290 Hb_000343_120--Hb_000035_290 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_000343_120--Hb_009545_100 Hb_000343_120--Hb_001199_100 Hb_003029_110 Hb_003029_110 Hb_000343_120--Hb_003029_110 Hb_002025_020 Hb_002025_020 Hb_009545_100--Hb_002025_020 Hb_000347_070 Hb_000347_070 Hb_009545_100--Hb_000347_070 Hb_009545_100--Hb_000116_500 Hb_009545_100--Hb_003029_110 Hb_000225_040 Hb_000225_040 Hb_009545_100--Hb_000225_040 Hb_003253_040 Hb_003253_040 Hb_001199_100--Hb_003253_040 Hb_001199_100--Hb_000166_130 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_001199_100--Hb_009545_100 Hb_172632_080 Hb_172632_080 Hb_001199_100--Hb_172632_080 Hb_009486_180 Hb_009486_180 Hb_009175_020--Hb_009486_180 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000190_120 Hb_000190_120 Hb_009175_020--Hb_000190_120 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070 Hb_002811_060 Hb_002811_060 Hb_000116_500--Hb_002811_060 Hb_021297_050 Hb_021297_050 Hb_000116_500--Hb_021297_050 Hb_012022_090 Hb_012022_090 Hb_000116_500--Hb_012022_090 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_016898_010 Hb_016898_010 Hb_000084_120--Hb_016898_010 Hb_003362_070 Hb_003362_070 Hb_000084_120--Hb_003362_070 Hb_003952_150 Hb_003952_150 Hb_000084_120--Hb_003952_150 Hb_004602_040 Hb_004602_040 Hb_000084_120--Hb_004602_040 Hb_000101_240 Hb_000101_240 Hb_000084_120--Hb_000101_240 Hb_003428_070 Hb_003428_070 Hb_000084_120--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.978773 1.12666 0.355911 1.02759 1.92006 1.71775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.722962 0.964667 1.11047 1.46245 1.13303

CAGE analysis