Hb_003988_010

Information

Type -
Description -
Location Contig3988: 7612-16462
Sequence    

Annotation

kegg
ID rcu:RCOM_0175340
description zinc finger protein, putative
nr
ID XP_012093114.1
description PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
swissprot
ID P93484
description Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1
trembl
ID A0A067L7U2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16320 PE=4 SV=1
Gene Ontology
ID GO:0005509
description vacuolar-sorting receptor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39682: 13924-16419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003988_010 0.0 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
2 Hb_010417_050 0.0603975752 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
3 Hb_002811_060 0.0629751799 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
4 Hb_000116_500 0.0804330809 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
5 Hb_003605_110 0.0809995134 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
6 Hb_004228_010 0.0839082381 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
7 Hb_002053_080 0.084152915 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Jatropha curcas]
8 Hb_004306_080 0.0882348205 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
9 Hb_011310_160 0.0882818039 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
10 Hb_000796_040 0.0914545067 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_012022_090 0.0924040615 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
12 Hb_014267_010 0.0941465669 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
13 Hb_005065_010 0.0962677758 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
14 Hb_058643_010 0.0973090214 - - hydrolase, putative [Ricinus communis]
15 Hb_005211_100 0.0990265825 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
16 Hb_001199_100 0.0991097816 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
17 Hb_001529_040 0.0997639941 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
18 Hb_006637_050 0.1001125478 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
19 Hb_000613_080 0.1004926208 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
20 Hb_003044_020 0.1006647075 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]

Gene co-expression network

sample Hb_003988_010 Hb_003988_010 Hb_010417_050 Hb_010417_050 Hb_003988_010--Hb_010417_050 Hb_002811_060 Hb_002811_060 Hb_003988_010--Hb_002811_060 Hb_000116_500 Hb_000116_500 Hb_003988_010--Hb_000116_500 Hb_003605_110 Hb_003605_110 Hb_003988_010--Hb_003605_110 Hb_004228_010 Hb_004228_010 Hb_003988_010--Hb_004228_010 Hb_002053_080 Hb_002053_080 Hb_003988_010--Hb_002053_080 Hb_014267_010 Hb_014267_010 Hb_010417_050--Hb_014267_010 Hb_010417_050--Hb_004228_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040 Hb_012022_090 Hb_012022_090 Hb_002811_060--Hb_012022_090 Hb_005054_100 Hb_005054_100 Hb_002811_060--Hb_005054_100 Hb_002811_060--Hb_000116_500 Hb_000608_320 Hb_000608_320 Hb_002811_060--Hb_000608_320 Hb_006660_010 Hb_006660_010 Hb_002811_060--Hb_006660_010 Hb_009545_100 Hb_009545_100 Hb_000116_500--Hb_009545_100 Hb_021297_050 Hb_021297_050 Hb_000116_500--Hb_021297_050 Hb_000116_500--Hb_012022_090 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_000028_280 Hb_000028_280 Hb_003605_110--Hb_000028_280 Hb_002740_110 Hb_002740_110 Hb_003605_110--Hb_002740_110 Hb_005065_010 Hb_005065_010 Hb_003605_110--Hb_005065_010 Hb_003253_040 Hb_003253_040 Hb_003605_110--Hb_003253_040 Hb_000343_120 Hb_000343_120 Hb_003605_110--Hb_000343_120 Hb_003605_110--Hb_009545_100 Hb_004306_080 Hb_004306_080 Hb_004228_010--Hb_004306_080 Hb_000796_040 Hb_000796_040 Hb_004228_010--Hb_000796_040 Hb_004228_010--Hb_014267_010 Hb_001472_090 Hb_001472_090 Hb_004228_010--Hb_001472_090 Hb_002493_020 Hb_002493_020 Hb_004228_010--Hb_002493_020 Hb_002053_080--Hb_000343_120 Hb_002053_080--Hb_009545_100 Hb_002053_080--Hb_001199_100 Hb_009175_020 Hb_009175_020 Hb_002053_080--Hb_009175_020 Hb_002053_080--Hb_000116_500 Hb_000084_120 Hb_000084_120 Hb_002053_080--Hb_000084_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2993 12.9141 6.10919 13.3888 27.5251 26.57
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.11794 8.14202 22.1245 17.607 14.0186

CAGE analysis