Hb_002092_130

Information

Type -
Description -
Location Contig2092: 154720-165527
Sequence    

Annotation

kegg
ID obr:102711138
description protein CASP-like
nr
ID XP_006650485.1
description PREDICTED: protein CASP-like [Oryza brachyantha]
swissprot
ID Q9LS42
description Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2
trembl
ID J3LS38
description Uncharacterized protein OS=Oryza brachyantha GN=OB03G38640 PE=4 SV=1
Gene Ontology
ID GO:0012505
description protein casp isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21648: 165411-165541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_130 0.0 - - PREDICTED: protein CASP-like [Oryza brachyantha]
2 Hb_002301_300 0.0642302668 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
3 Hb_001062_010 0.06613209 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
4 Hb_000603_030 0.0699752986 - - Ribonuclease III, putative [Ricinus communis]
5 Hb_002311_290 0.0742050444 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
6 Hb_002631_170 0.0769675507 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
7 Hb_004267_040 0.0774588972 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
8 Hb_002681_090 0.0786970018 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
9 Hb_001089_070 0.0795873438 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
10 Hb_003847_130 0.080876812 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
11 Hb_000563_130 0.0819877005 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
12 Hb_003645_060 0.0827442823 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
13 Hb_005618_050 0.0827909843 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
14 Hb_000900_030 0.0837316425 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
15 Hb_007632_240 0.0859482362 - - transporter, putative [Ricinus communis]
16 Hb_003375_070 0.0867621939 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
17 Hb_007635_040 0.086963215 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
18 Hb_000139_370 0.0879160274 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
19 Hb_025477_040 0.0886628062 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
20 Hb_007645_100 0.0899380394 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002092_130 Hb_002092_130 Hb_002301_300 Hb_002301_300 Hb_002092_130--Hb_002301_300 Hb_001062_010 Hb_001062_010 Hb_002092_130--Hb_001062_010 Hb_000603_030 Hb_000603_030 Hb_002092_130--Hb_000603_030 Hb_002311_290 Hb_002311_290 Hb_002092_130--Hb_002311_290 Hb_002631_170 Hb_002631_170 Hb_002092_130--Hb_002631_170 Hb_004267_040 Hb_004267_040 Hb_002092_130--Hb_004267_040 Hb_003436_020 Hb_003436_020 Hb_002301_300--Hb_003436_020 Hb_010294_010 Hb_010294_010 Hb_002301_300--Hb_010294_010 Hb_001009_320 Hb_001009_320 Hb_002301_300--Hb_001009_320 Hb_003375_070 Hb_003375_070 Hb_002301_300--Hb_003375_070 Hb_002301_300--Hb_004267_040 Hb_000900_030 Hb_000900_030 Hb_001062_010--Hb_000900_030 Hb_009976_020 Hb_009976_020 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_001062_010--Hb_002311_290 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_009175_020 Hb_009175_020 Hb_001062_010--Hb_009175_020 Hb_000398_080 Hb_000398_080 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_007657_020 Hb_007657_020 Hb_000603_030--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_000603_030--Hb_002681_090 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_000603_030--Hb_004267_040 Hb_002311_290--Hb_007657_020 Hb_002311_290--Hb_002681_090 Hb_002311_290--Hb_000603_030 Hb_002311_290--Hb_002631_170 Hb_000227_220 Hb_000227_220 Hb_002311_290--Hb_000227_220 Hb_009486_180 Hb_009486_180 Hb_002631_170--Hb_009486_180 Hb_002631_170--Hb_001062_010 Hb_001935_110 Hb_001935_110 Hb_002631_170--Hb_001935_110 Hb_002631_170--Hb_000603_030 Hb_000011_100 Hb_000011_100 Hb_004267_040--Hb_000011_100 Hb_000120_280 Hb_000120_280 Hb_004267_040--Hb_000120_280 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_004267_040--Hb_000398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15743 4.58306 5.92114 5.56257 9.53861 6.5704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.12481 4.17329 3.46764 9.2508 8.27864

CAGE analysis