Hb_000105_030

Information

Type -
Description -
Location Contig105: 19014-33855
Sequence    

Annotation

kegg
ID rcu:RCOM_1704860
description fkbp-rapamycin associated protein, putative
nr
ID XP_002518246.1
description fkbp-rapamycin associated protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RWX7
description Fkbp-rapamycin associated protein, putative OS=Ricinus communis GN=RCOM_1704860 PE=4 SV=1
Gene Ontology
ID GO:0000975
description target of rapamycin isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01685: 7020-22941 , PASA_asmbl_01687: 25944-30434 , PASA_asmbl_01688: 32024-32193 , PASA_asmbl_01689: 25969-33451 , PASA_asmbl_01690: 23040-26128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000105_030 0.0 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
2 Hb_000631_110 0.0889761071 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
3 Hb_014497_020 0.0904127554 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
4 Hb_011609_150 0.1022140304 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
5 Hb_003211_040 0.1029267757 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
6 Hb_000175_120 0.107496702 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
7 Hb_008948_160 0.1088468435 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
8 Hb_007576_210 0.1095606425 - - PREDICTED: protein furry homolog [Jatropha curcas]
9 Hb_000512_030 0.1117772194 - - wall-associated kinase, putative [Ricinus communis]
10 Hb_003895_040 0.1118381687 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
11 Hb_000061_510 0.1200518358 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
12 Hb_002095_070 0.1202713282 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
13 Hb_002005_080 0.1219693075 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
14 Hb_011947_050 0.1224739061 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
15 Hb_001662_180 0.122726296 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
16 Hb_000940_150 0.1234678152 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
17 Hb_000046_180 0.1256732976 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
18 Hb_174865_020 0.1262621807 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
19 Hb_011828_030 0.126530085 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
20 Hb_000105_020 0.1289573587 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]

Gene co-expression network

sample Hb_000105_030 Hb_000105_030 Hb_000631_110 Hb_000631_110 Hb_000105_030--Hb_000631_110 Hb_014497_020 Hb_014497_020 Hb_000105_030--Hb_014497_020 Hb_011609_150 Hb_011609_150 Hb_000105_030--Hb_011609_150 Hb_003211_040 Hb_003211_040 Hb_000105_030--Hb_003211_040 Hb_000175_120 Hb_000175_120 Hb_000105_030--Hb_000175_120 Hb_008948_160 Hb_008948_160 Hb_000105_030--Hb_008948_160 Hb_000940_150 Hb_000940_150 Hb_000631_110--Hb_000940_150 Hb_000631_110--Hb_000175_120 Hb_000083_270 Hb_000083_270 Hb_000631_110--Hb_000083_270 Hb_002005_080 Hb_002005_080 Hb_000631_110--Hb_002005_080 Hb_185830_070 Hb_185830_070 Hb_000631_110--Hb_185830_070 Hb_007576_210 Hb_007576_210 Hb_014497_020--Hb_007576_210 Hb_003895_040 Hb_003895_040 Hb_014497_020--Hb_003895_040 Hb_001124_050 Hb_001124_050 Hb_014497_020--Hb_001124_050 Hb_014497_020--Hb_003211_040 Hb_001662_180 Hb_001662_180 Hb_014497_020--Hb_001662_180 Hb_009486_170 Hb_009486_170 Hb_014497_020--Hb_009486_170 Hb_003119_080 Hb_003119_080 Hb_011609_150--Hb_003119_080 Hb_011609_150--Hb_003211_040 Hb_007120_060 Hb_007120_060 Hb_011609_150--Hb_007120_060 Hb_000086_690 Hb_000086_690 Hb_011609_150--Hb_000086_690 Hb_011609_150--Hb_014497_020 Hb_002095_070 Hb_002095_070 Hb_011609_150--Hb_002095_070 Hb_003211_040--Hb_007576_210 Hb_003211_040--Hb_002095_070 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003211_040--Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003211_040--Hb_002909_120 Hb_003211_040--Hb_009486_170 Hb_000175_120--Hb_000940_150 Hb_000175_120--Hb_001662_180 Hb_000035_010 Hb_000035_010 Hb_000175_120--Hb_000035_010 Hb_000175_120--Hb_185830_070 Hb_000175_120--Hb_014497_020 Hb_120470_010 Hb_120470_010 Hb_008948_160--Hb_120470_010 Hb_143986_010 Hb_143986_010 Hb_008948_160--Hb_143986_010 Hb_000105_020 Hb_000105_020 Hb_008948_160--Hb_000105_020 Hb_011791_020 Hb_011791_020 Hb_008948_160--Hb_011791_020 Hb_003604_040 Hb_003604_040 Hb_008948_160--Hb_003604_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.25712 12.7308 2.23309 3.43674 7.23478 7.07582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38351 0.835127 4.03142 12.0157 8.22931

CAGE analysis