Hb_143986_010

Information

Type -
Description -
Location Contig143986: 2831-3380
Sequence    

Annotation

kegg
ID rcu:RCOM_1452500
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_012068655.1
description PREDICTED: beta-galactosidase [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7P4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24529 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143986_010 0.0 - - PREDICTED: beta-galactosidase [Jatropha curcas]
2 Hb_011791_020 0.0861529749 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
3 Hb_008948_160 0.1090549698 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
4 Hb_120470_010 0.1124411553 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
5 Hb_000327_080 0.1179943883 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
6 Hb_000105_020 0.1226916602 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
7 Hb_000117_070 0.1284760482 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
8 Hb_000061_510 0.1351615439 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
9 Hb_000105_030 0.1384388505 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
10 Hb_000940_160 0.1404778848 - - hypothetical protein VITISV_017596 [Vitis vinifera]
11 Hb_004032_040 0.1408234485 - - unknown [Medicago truncatula]
12 Hb_000526_060 0.1411544969 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
13 Hb_003604_040 0.1416172255 - - Serine/threonine-protein kinase sepA [Morus notabilis]
14 Hb_065500_030 0.1419445499 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
15 Hb_005214_150 0.1433371101 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
16 Hb_000599_130 0.1442094991 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
17 Hb_000521_170 0.144269712 - - PREDICTED: callose synthase 1 [Jatropha curcas]
18 Hb_000162_020 0.1444148545 - - protein translocase, putative [Ricinus communis]
19 Hb_011671_230 0.1452395242 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006663_040 0.1499760996 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_143986_010 Hb_143986_010 Hb_011791_020 Hb_011791_020 Hb_143986_010--Hb_011791_020 Hb_008948_160 Hb_008948_160 Hb_143986_010--Hb_008948_160 Hb_120470_010 Hb_120470_010 Hb_143986_010--Hb_120470_010 Hb_000327_080 Hb_000327_080 Hb_143986_010--Hb_000327_080 Hb_000105_020 Hb_000105_020 Hb_143986_010--Hb_000105_020 Hb_000117_070 Hb_000117_070 Hb_143986_010--Hb_000117_070 Hb_011791_020--Hb_120470_010 Hb_000526_060 Hb_000526_060 Hb_011791_020--Hb_000526_060 Hb_000123_350 Hb_000123_350 Hb_011791_020--Hb_000123_350 Hb_011791_020--Hb_000117_070 Hb_004032_040 Hb_004032_040 Hb_011791_020--Hb_004032_040 Hb_008948_160--Hb_120470_010 Hb_000105_030 Hb_000105_030 Hb_008948_160--Hb_000105_030 Hb_008948_160--Hb_000105_020 Hb_008948_160--Hb_011791_020 Hb_003604_040 Hb_003604_040 Hb_008948_160--Hb_003604_040 Hb_120470_010--Hb_000526_060 Hb_120470_010--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_120470_010--Hb_004032_040 Hb_005214_150 Hb_005214_150 Hb_000327_080--Hb_005214_150 Hb_009449_090 Hb_009449_090 Hb_000327_080--Hb_009449_090 Hb_007818_040 Hb_007818_040 Hb_000327_080--Hb_007818_040 Hb_011671_230 Hb_011671_230 Hb_000327_080--Hb_011671_230 Hb_002571_030 Hb_002571_030 Hb_000327_080--Hb_002571_030 Hb_007576_220 Hb_007576_220 Hb_000327_080--Hb_007576_220 Hb_000105_020--Hb_000105_030 Hb_000162_020 Hb_000162_020 Hb_000105_020--Hb_000162_020 Hb_000105_020--Hb_003604_040 Hb_000046_180 Hb_000046_180 Hb_000105_020--Hb_000046_180 Hb_000896_060 Hb_000896_060 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_000117_070--Hb_000526_060 Hb_044653_020 Hb_044653_020 Hb_000117_070--Hb_044653_020 Hb_000703_130 Hb_000703_130 Hb_000117_070--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2665 53.2 13.8405 6.63671 24.1863 22.4947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.86922 1.27701 7.85237 32.0802 18.733

CAGE analysis