Hb_001124_050

Information

Type transcription factor
Description TF Family: SNF2
Location Contig1124: 87558-111342
Sequence    

Annotation

kegg
ID rcu:RCOM_0679520
description hypothetical protein
nr
ID XP_012069422.1
description PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
swissprot
ID F4IHS2
description Chromatin structure-remodeling complex protein SYD OS=Arabidopsis thaliana GN=SYD PE=1 SV=1
trembl
ID A0A067KYG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02031 PE=4 SV=1
Gene Ontology
ID GO:0016787
description chromatin structure-remodeling complex protein syd-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03792: 87809-90264 , PASA_asmbl_03793: 90714-95141 , PASA_asmbl_03794: 96555-111291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_050 0.0 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
2 Hb_009486_170 0.0592398002 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
3 Hb_009486_090 0.0605415903 - - RNA binding protein, putative [Ricinus communis]
4 Hb_002521_020 0.0612642674 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
5 Hb_006031_010 0.0661574827 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
6 Hb_001133_030 0.0672807185 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
7 Hb_001951_170 0.0680877055 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
8 Hb_000574_530 0.0711557359 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
9 Hb_014497_020 0.0712677421 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
10 Hb_123531_010 0.0719603307 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
11 Hb_001377_100 0.0723117679 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
12 Hb_171554_040 0.0724037501 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
13 Hb_001662_180 0.074437211 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
14 Hb_007632_010 0.0755110148 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
15 Hb_005186_040 0.0768265401 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
16 Hb_007576_210 0.0785055768 - - PREDICTED: protein furry homolog [Jatropha curcas]
17 Hb_000363_300 0.0789884037 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
18 Hb_012244_020 0.0792158186 - - calpain, putative [Ricinus communis]
19 Hb_000196_060 0.0807734502 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
20 Hb_003216_090 0.0820944391 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001124_050 Hb_001124_050 Hb_009486_170 Hb_009486_170 Hb_001124_050--Hb_009486_170 Hb_009486_090 Hb_009486_090 Hb_001124_050--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_001124_050--Hb_002521_020 Hb_006031_010 Hb_006031_010 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001951_170 Hb_001951_170 Hb_001124_050--Hb_001951_170 Hb_009486_170--Hb_001133_030 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_009486_090--Hb_006031_010 Hb_001377_100 Hb_001377_100 Hb_009486_090--Hb_001377_100 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_009486_090--Hb_001951_170 Hb_009486_090--Hb_009486_170 Hb_010180_060 Hb_010180_060 Hb_002521_020--Hb_010180_060 Hb_005186_040 Hb_005186_040 Hb_002521_020--Hb_005186_040 Hb_002521_020--Hb_001133_030 Hb_002521_020--Hb_009486_170 Hb_002521_020--Hb_001377_100 Hb_002007_110 Hb_002007_110 Hb_006031_010--Hb_002007_110 Hb_012244_020 Hb_012244_020 Hb_006031_010--Hb_012244_020 Hb_006031_010--Hb_001377_100 Hb_006031_010--Hb_001951_170 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.78802 31.6807 9.75201 18.1726 13.27 16.6997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27339 7.2582 10.0935 25.6707 30.3127

CAGE analysis