Hb_000940_150

Information

Type -
Description -
Location Contig940: 211566-243392
Sequence    

Annotation

kegg
ID vvi:100264071
description uncharacterized LOC100264071
nr
ID XP_012084375.1
description PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
swissprot
ID Q5SRE5
description Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP188 PE=1 SV=1
trembl
ID A0A061DZF4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_006688 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nucleoporin nup188 homolog isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63145: 213470-218699 , PASA_asmbl_63146: 227648-227960 , PASA_asmbl_63147: 218938-228785 , PASA_asmbl_63148: 228970-255181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_150 0.0 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
2 Hb_000631_110 0.0568521109 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
3 Hb_185830_070 0.0650569592 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
4 Hb_000175_120 0.066953442 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
5 Hb_000022_170 0.077095198 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
6 Hb_004218_250 0.0979995258 - - PREDICTED: beta-galactosidase [Jatropha curcas]
7 Hb_000574_530 0.0993080519 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
8 Hb_002005_080 0.0998981991 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
9 Hb_002027_190 0.1014093018 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
10 Hb_000950_060 0.1019276915 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
11 Hb_000083_270 0.1030793089 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
12 Hb_001322_180 0.1121943968 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
13 Hb_000035_010 0.1126670807 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
14 Hb_000049_250 0.1157204795 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
15 Hb_000512_030 0.1170061979 - - wall-associated kinase, putative [Ricinus communis]
16 Hb_000684_290 0.1178366793 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
17 Hb_001662_180 0.1196717882 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
18 Hb_000105_030 0.1234678152 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
19 Hb_007632_010 0.1237142751 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
20 Hb_000661_260 0.1253351872 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]

Gene co-expression network

sample Hb_000940_150 Hb_000940_150 Hb_000631_110 Hb_000631_110 Hb_000940_150--Hb_000631_110 Hb_185830_070 Hb_185830_070 Hb_000940_150--Hb_185830_070 Hb_000175_120 Hb_000175_120 Hb_000940_150--Hb_000175_120 Hb_000022_170 Hb_000022_170 Hb_000940_150--Hb_000022_170 Hb_004218_250 Hb_004218_250 Hb_000940_150--Hb_004218_250 Hb_000574_530 Hb_000574_530 Hb_000940_150--Hb_000574_530 Hb_000631_110--Hb_000175_120 Hb_000083_270 Hb_000083_270 Hb_000631_110--Hb_000083_270 Hb_000105_030 Hb_000105_030 Hb_000631_110--Hb_000105_030 Hb_002005_080 Hb_002005_080 Hb_000631_110--Hb_002005_080 Hb_000631_110--Hb_185830_070 Hb_185830_070--Hb_000175_120 Hb_002027_190 Hb_002027_190 Hb_185830_070--Hb_002027_190 Hb_185830_070--Hb_000574_530 Hb_185830_070--Hb_004218_250 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_000035_010 Hb_000035_010 Hb_000175_120--Hb_000035_010 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_000022_170--Hb_000175_120 Hb_000022_170--Hb_000631_110 Hb_000950_060 Hb_000950_060 Hb_000022_170--Hb_000950_060 Hb_000022_170--Hb_004218_250 Hb_000800_110 Hb_000800_110 Hb_000022_170--Hb_000800_110 Hb_000317_350 Hb_000317_350 Hb_004218_250--Hb_000317_350 Hb_000022_150 Hb_000022_150 Hb_004218_250--Hb_000022_150 Hb_004218_250--Hb_002027_190 Hb_007632_010 Hb_007632_010 Hb_000574_530--Hb_007632_010 Hb_001124_050 Hb_001124_050 Hb_000574_530--Hb_001124_050 Hb_171554_040 Hb_171554_040 Hb_000574_530--Hb_171554_040 Hb_006531_020 Hb_006531_020 Hb_000574_530--Hb_006531_020 Hb_009486_090 Hb_009486_090 Hb_000574_530--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_000574_530--Hb_002521_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.640885 2.22418 0.606557 1.00043 0.941566 1.2829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.465038 0.420787 0.901361 3.58928 1.85439

CAGE analysis