Hb_000022_170

Information

Type -
Description -
Location Contig22: 256406-265470
Sequence    

Annotation

kegg
ID rcu:RCOM_0803950
description hypothetical protein
nr
ID XP_012065273.1
description PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23005 PE=4 SV=1
Gene Ontology
ID GO:0008270
description swim zinc finger family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22608: 256629-260308 , PASA_asmbl_22609: 242581-262422 , PASA_asmbl_22610: 260631-261372 , PASA_asmbl_22611: 242581-263801 , PASA_asmbl_22612: 260877-262422 , PASA_asmbl_22614: 256655-260309 , PASA_asmbl_22615: 236253-260587 , PASA_asmbl_22616: 256655-259696 , PASA_asmbl_22617: 237196-260343
cDNA
(Sanger)
(ID:Location)		 017_B11.ab1: 256789-260309 , 043_C16.ab1: 256649-259820

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_170 0.0 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
2 Hb_000940_150 0.077095198 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
3 Hb_000175_120 0.0957160668 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
4 Hb_000631_110 0.0986690136 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
5 Hb_000950_060 0.1094023488 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
6 Hb_004218_250 0.1104440656 - - PREDICTED: beta-galactosidase [Jatropha curcas]
7 Hb_000800_110 0.1115409547 - - NAD dehydrogenase, putative [Ricinus communis]
8 Hb_000022_150 0.1135441292 - - -
9 Hb_001223_010 0.1176679398 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
10 Hb_000035_010 0.1177626915 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
11 Hb_001322_180 0.1247764422 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
12 Hb_185830_070 0.1292970151 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
13 Hb_007120_060 0.1311412562 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
14 Hb_002005_080 0.1347541883 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
15 Hb_000105_030 0.1393048482 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
16 Hb_002027_190 0.140318469 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
17 Hb_000406_060 0.1407062335 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
18 Hb_003498_130 0.1409777569 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
19 Hb_007123_050 0.1416253967 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
20 Hb_000049_250 0.1418322434 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000022_170 Hb_000022_170 Hb_000940_150 Hb_000940_150 Hb_000022_170--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_000022_170--Hb_000175_120 Hb_000631_110 Hb_000631_110 Hb_000022_170--Hb_000631_110 Hb_000950_060 Hb_000950_060 Hb_000022_170--Hb_000950_060 Hb_004218_250 Hb_004218_250 Hb_000022_170--Hb_004218_250 Hb_000800_110 Hb_000800_110 Hb_000022_170--Hb_000800_110 Hb_000940_150--Hb_000631_110 Hb_185830_070 Hb_185830_070 Hb_000940_150--Hb_185830_070 Hb_000940_150--Hb_000175_120 Hb_000940_150--Hb_004218_250 Hb_000574_530 Hb_000574_530 Hb_000940_150--Hb_000574_530 Hb_000175_120--Hb_000631_110 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_000035_010 Hb_000035_010 Hb_000175_120--Hb_000035_010 Hb_000175_120--Hb_185830_070 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_000083_270 Hb_000083_270 Hb_000631_110--Hb_000083_270 Hb_000105_030 Hb_000105_030 Hb_000631_110--Hb_000105_030 Hb_002005_080 Hb_002005_080 Hb_000631_110--Hb_002005_080 Hb_000631_110--Hb_185830_070 Hb_002639_080 Hb_002639_080 Hb_000950_060--Hb_002639_080 Hb_000950_060--Hb_000035_010 Hb_003913_110 Hb_003913_110 Hb_000950_060--Hb_003913_110 Hb_114151_020 Hb_114151_020 Hb_000950_060--Hb_114151_020 Hb_000950_060--Hb_000175_120 Hb_001341_180 Hb_001341_180 Hb_000950_060--Hb_001341_180 Hb_004218_250--Hb_185830_070 Hb_000317_350 Hb_000317_350 Hb_004218_250--Hb_000317_350 Hb_000022_150 Hb_000022_150 Hb_004218_250--Hb_000022_150 Hb_002027_190 Hb_002027_190 Hb_004218_250--Hb_002027_190 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000800_110--Hb_000035_010 Hb_000800_110--Hb_000022_150 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000800_110--Hb_000950_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35403 8.73799 3.46329 3.12002 4.83594 5.2732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95316 1.44531 2.66941 17.0509 9.89007

CAGE analysis