Hb_065408_010

Information

Type -
Description -
Location Contig65408: 109-855
Sequence    

Annotation

kegg
ID rcu:RCOM_1078440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085764.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID B9RM74
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1078440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065408_010 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
2 Hb_007120_060 0.0634215934 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
3 Hb_005211_020 0.0814684379 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
4 Hb_002636_110 0.0826250501 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
5 Hb_001726_100 0.0836538086 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
6 Hb_000925_090 0.0844562397 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
7 Hb_001085_030 0.0911807441 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
8 Hb_007545_130 0.0914789583 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
9 Hb_002600_060 0.0928876754 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
10 Hb_001133_030 0.0983965529 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
11 Hb_000826_070 0.1012667968 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003124_100 0.1021623498 - - -
13 Hb_000083_070 0.1034552191 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
14 Hb_000363_300 0.1047177596 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
15 Hb_011609_150 0.104820747 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
16 Hb_001726_050 0.1058765313 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
17 Hb_012244_020 0.1070948108 - - calpain, putative [Ricinus communis]
18 Hb_000008_410 0.1111622065 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
19 Hb_003506_050 0.1123011852 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000345_330 0.1135500002 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_065408_010 Hb_065408_010 Hb_007120_060 Hb_007120_060 Hb_065408_010--Hb_007120_060 Hb_005211_020 Hb_005211_020 Hb_065408_010--Hb_005211_020 Hb_002636_110 Hb_002636_110 Hb_065408_010--Hb_002636_110 Hb_001726_100 Hb_001726_100 Hb_065408_010--Hb_001726_100 Hb_000925_090 Hb_000925_090 Hb_065408_010--Hb_000925_090 Hb_001085_030 Hb_001085_030 Hb_065408_010--Hb_001085_030 Hb_007120_060--Hb_001726_100 Hb_007120_060--Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_007120_060--Hb_001133_030 Hb_007120_060--Hb_001085_030 Hb_000003_410 Hb_000003_410 Hb_007120_060--Hb_000003_410 Hb_002600_060 Hb_002600_060 Hb_005211_020--Hb_002600_060 Hb_000826_070 Hb_000826_070 Hb_005211_020--Hb_000826_070 Hb_002973_110 Hb_002973_110 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_013459_020 Hb_013459_020 Hb_005211_020--Hb_013459_020 Hb_005211_020--Hb_000925_090 Hb_003119_080 Hb_003119_080 Hb_002636_110--Hb_003119_080 Hb_002636_110--Hb_002600_060 Hb_001789_040 Hb_001789_040 Hb_002636_110--Hb_001789_040 Hb_002909_120 Hb_002909_120 Hb_002636_110--Hb_002909_120 Hb_002636_110--Hb_000608_300 Hb_001726_050 Hb_001726_050 Hb_001726_100--Hb_001726_050 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_001726_100--Hb_012244_020 Hb_000925_090--Hb_001133_030 Hb_000925_090--Hb_012244_020 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001085_030--Hb_001133_030 Hb_000261_150 Hb_000261_150 Hb_001085_030--Hb_000261_150 Hb_001085_030--Hb_000925_090 Hb_001085_030--Hb_000083_070 Hb_014497_020 Hb_014497_020 Hb_001085_030--Hb_014497_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.472317 1.24562 0.541442 0.418421 0.797109 0.699128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.360932 0.212778 0.250752 0.95579 1.80511

CAGE analysis