Hb_001789_040

Information

Type -
Description -
Location Contig1789: 65322-70780
Sequence    

Annotation

kegg
ID rcu:RCOM_1583400
description hypothetical protein
nr
ID XP_012090241.1
description PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26095 PE=4 SV=1
Gene Ontology
ID GO:0009536
description probable gpi-anchored adhesin-like protein pga55 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17192: 65573-65900 , PASA_asmbl_17193: 65918-68082 , PASA_asmbl_17194: 67861-67969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_040 0.0 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
2 Hb_000608_300 0.063691817 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
3 Hb_005402_040 0.0677046925 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
4 Hb_004306_030 0.0724213599 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
5 Hb_027472_220 0.0725249803 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
6 Hb_000025_710 0.0726805638 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_002631_140 0.0762914206 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
8 Hb_002350_010 0.078676628 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
9 Hb_007635_040 0.0798563235 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
10 Hb_001244_150 0.079929594 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
11 Hb_012760_100 0.0802175404 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
12 Hb_000568_050 0.081111197 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
13 Hb_001191_120 0.0822704815 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
14 Hb_002636_110 0.0838626215 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
15 Hb_000740_100 0.0839776239 - - calpain, putative [Ricinus communis]
16 Hb_089140_050 0.0841117757 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
17 Hb_001062_010 0.0845415816 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
18 Hb_000377_050 0.0846235419 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
19 Hb_004920_090 0.0853104065 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002641_130 0.0853710012 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_040 Hb_001789_040 Hb_000608_300 Hb_000608_300 Hb_001789_040--Hb_000608_300 Hb_005402_040 Hb_005402_040 Hb_001789_040--Hb_005402_040 Hb_004306_030 Hb_004306_030 Hb_001789_040--Hb_004306_030 Hb_027472_220 Hb_027472_220 Hb_001789_040--Hb_027472_220 Hb_000025_710 Hb_000025_710 Hb_001789_040--Hb_000025_710 Hb_002631_140 Hb_002631_140 Hb_001789_040--Hb_002631_140 Hb_000608_300--Hb_004306_030 Hb_000568_050 Hb_000568_050 Hb_000608_300--Hb_000568_050 Hb_002600_060 Hb_002600_060 Hb_000608_300--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_000608_300--Hb_005211_020 Hb_012055_110 Hb_012055_110 Hb_000608_300--Hb_012055_110 Hb_005402_040--Hb_027472_220 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_004306_030--Hb_000568_050 Hb_001244_150 Hb_001244_150 Hb_004306_030--Hb_001244_150 Hb_004306_030--Hb_012055_110 Hb_000011_270 Hb_000011_270 Hb_004306_030--Hb_000011_270 Hb_000934_210 Hb_000934_210 Hb_027472_220--Hb_000934_210 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_002350_010 Hb_002350_010 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_000082_070 Hb_000082_070 Hb_002631_140--Hb_000082_070 Hb_009771_110 Hb_009771_110 Hb_002631_140--Hb_009771_110 Hb_160459_040 Hb_160459_040 Hb_002631_140--Hb_160459_040 Hb_143489_010 Hb_143489_010 Hb_002631_140--Hb_143489_010 Hb_000261_030 Hb_000261_030 Hb_002631_140--Hb_000261_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7088 14.4373 9.521 8.82373 16.099 12.1052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.96826 5.88038 5.26118 15.0934 19.1086

CAGE analysis