Hb_004306_030

Information

Type -
Description -
Location Contig4306: 14525-21928
Sequence    

Annotation

kegg
ID rcu:RCOM_1719210
description hypothetical protein
nr
ID XP_012085078.1
description PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
swissprot
ID Q3SZL5
description GPI transamidase component PIG-S OS=Bos taurus GN=PIGS PE=2 SV=3
trembl
ID A0A067JQY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17524 PE=4 SV=1
Gene Ontology
ID GO:0042765
description gpi transamidase component pig-s

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42171: 14575-21161 , PASA_asmbl_42172: 21342-21507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_030 0.0 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
2 Hb_000608_300 0.056691178 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
3 Hb_001789_040 0.0724213599 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
4 Hb_000568_050 0.0747419178 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
5 Hb_001244_150 0.0808394423 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
6 Hb_012055_110 0.0817991508 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
7 Hb_000011_270 0.0829078815 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
8 Hb_005211_020 0.0837599919 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
9 Hb_000826_070 0.0853142981 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012760_100 0.0862081731 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
11 Hb_007635_040 0.0868874767 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
12 Hb_006355_020 0.0883050835 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
13 Hb_000284_230 0.0883553167 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
14 Hb_002631_140 0.0894108318 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
15 Hb_005215_010 0.090121983 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
16 Hb_001623_280 0.0919622205 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
17 Hb_000320_470 0.0930210194 - - calcium-dependent protein kinase [Hevea brasiliensis]
18 Hb_011174_020 0.0935803585 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
19 Hb_004324_330 0.0945084797 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
20 Hb_013459_020 0.0956347613 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]

Gene co-expression network

sample Hb_004306_030 Hb_004306_030 Hb_000608_300 Hb_000608_300 Hb_004306_030--Hb_000608_300 Hb_001789_040 Hb_001789_040 Hb_004306_030--Hb_001789_040 Hb_000568_050 Hb_000568_050 Hb_004306_030--Hb_000568_050 Hb_001244_150 Hb_001244_150 Hb_004306_030--Hb_001244_150 Hb_012055_110 Hb_012055_110 Hb_004306_030--Hb_012055_110 Hb_000011_270 Hb_000011_270 Hb_004306_030--Hb_000011_270 Hb_000608_300--Hb_001789_040 Hb_000608_300--Hb_000568_050 Hb_002600_060 Hb_002600_060 Hb_000608_300--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_000608_300--Hb_005211_020 Hb_000608_300--Hb_012055_110 Hb_005402_040 Hb_005402_040 Hb_001789_040--Hb_005402_040 Hb_027472_220 Hb_027472_220 Hb_001789_040--Hb_027472_220 Hb_000025_710 Hb_000025_710 Hb_001789_040--Hb_000025_710 Hb_002631_140 Hb_002631_140 Hb_001789_040--Hb_002631_140 Hb_011174_020 Hb_011174_020 Hb_000568_050--Hb_011174_020 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000568_050--Hb_000011_270 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070 Hb_000573_060 Hb_000573_060 Hb_001244_150--Hb_000573_060 Hb_002641_130 Hb_002641_130 Hb_001244_150--Hb_002641_130 Hb_002233_130 Hb_002233_130 Hb_001244_150--Hb_002233_130 Hb_004324_330 Hb_004324_330 Hb_001244_150--Hb_004324_330 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_001244_150--Hb_000608_300 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_003093_040 Hb_003093_040 Hb_000011_270--Hb_003093_040 Hb_001221_180 Hb_001221_180 Hb_000011_270--Hb_001221_180 Hb_000175_410 Hb_000175_410 Hb_000011_270--Hb_000175_410 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.11856 9.59748 8.70047 9.63831 11.831 10.2276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.96137 4.55002 3.37258 11.0704 17.4888

CAGE analysis