Hb_016734_060

Information

Type -
Description -
Location Contig16734: 34689-50298
Sequence    

Annotation

kegg
ID rcu:RCOM_0248560
description nucleolar RNA-associated protein, putative
nr
ID XP_012066172.1
description PREDICTED: nucleolar protein 6 [Jatropha curcas]
swissprot
ID Q6NRY2
description Nucleolar protein 6 OS=Xenopus laevis GN=nol6 PE=2 SV=2
trembl
ID A0A067L2Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23753 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nucleolar protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15464: 34785-35150 , PASA_asmbl_15465: 37196-38049 , PASA_asmbl_15466: 40141-45253 , PASA_asmbl_15467: 45544-46262 , PASA_asmbl_15468: 48560-50074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016734_060 0.0 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
2 Hb_001031_090 0.0621177909 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
3 Hb_002046_010 0.0761191801 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002217_430 0.0773814439 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
5 Hb_002016_090 0.0810527134 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
6 Hb_002805_210 0.0825985563 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_027472_220 0.0851391131 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
8 Hb_004223_160 0.0928779446 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
9 Hb_003529_170 0.0972356463 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
10 Hb_005542_140 0.0982258181 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
11 Hb_001953_120 0.0983567337 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
12 Hb_001104_110 0.0985075447 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
13 Hb_088144_020 0.0997311497 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
14 Hb_007955_050 0.0998164869 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
15 Hb_000795_040 0.1006772218 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
16 Hb_000920_300 0.1027162925 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
17 Hb_008948_140 0.1034016738 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
18 Hb_002357_070 0.1035175752 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
19 Hb_000236_400 0.1039955695 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
20 Hb_004327_040 0.1044173451 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_016734_060 Hb_016734_060 Hb_001031_090 Hb_001031_090 Hb_016734_060--Hb_001031_090 Hb_002046_010 Hb_002046_010 Hb_016734_060--Hb_002046_010 Hb_002217_430 Hb_002217_430 Hb_016734_060--Hb_002217_430 Hb_002016_090 Hb_002016_090 Hb_016734_060--Hb_002016_090 Hb_002805_210 Hb_002805_210 Hb_016734_060--Hb_002805_210 Hb_027472_220 Hb_027472_220 Hb_016734_060--Hb_027472_220 Hb_004109_380 Hb_004109_380 Hb_001031_090--Hb_004109_380 Hb_004223_160 Hb_004223_160 Hb_001031_090--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001031_090--Hb_008948_140 Hb_049436_010 Hb_049436_010 Hb_001031_090--Hb_049436_010 Hb_002889_020 Hb_002889_020 Hb_001031_090--Hb_002889_020 Hb_000742_170 Hb_000742_170 Hb_002046_010--Hb_000742_170 Hb_001009_280 Hb_001009_280 Hb_002046_010--Hb_001009_280 Hb_000979_220 Hb_000979_220 Hb_002046_010--Hb_000979_220 Hb_183510_020 Hb_183510_020 Hb_002046_010--Hb_183510_020 Hb_005333_050 Hb_005333_050 Hb_002046_010--Hb_005333_050 Hb_002217_430--Hb_027472_220 Hb_005542_140 Hb_005542_140 Hb_002217_430--Hb_005542_140 Hb_001668_010 Hb_001668_010 Hb_002217_430--Hb_001668_010 Hb_000398_080 Hb_000398_080 Hb_002217_430--Hb_000398_080 Hb_002350_010 Hb_002350_010 Hb_002217_430--Hb_002350_010 Hb_002968_070 Hb_002968_070 Hb_002016_090--Hb_002968_070 Hb_000340_030 Hb_000340_030 Hb_002016_090--Hb_000340_030 Hb_003142_040 Hb_003142_040 Hb_002016_090--Hb_003142_040 Hb_012940_040 Hb_012940_040 Hb_002016_090--Hb_012940_040 Hb_000373_170 Hb_000373_170 Hb_002016_090--Hb_000373_170 Hb_003711_010 Hb_003711_010 Hb_002016_090--Hb_003711_010 Hb_011174_020 Hb_011174_020 Hb_002805_210--Hb_011174_020 Hb_002805_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_002805_210--Hb_012244_020 Hb_000934_210 Hb_000934_210 Hb_002805_210--Hb_000934_210 Hb_001157_160 Hb_001157_160 Hb_002805_210--Hb_001157_160 Hb_123531_010 Hb_123531_010 Hb_002805_210--Hb_123531_010 Hb_027472_220--Hb_000934_210 Hb_005402_040 Hb_005402_040 Hb_027472_220--Hb_005402_040 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.70915 5.25304 3.17442 2.50395 2.98407 2.96199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97088 2.84674 1.16681 6.48922 4.031

CAGE analysis