Hb_049436_010

Information

Type -
Description -
Location Contig49436: 8806-14528
Sequence    

Annotation

kegg
ID gmx:100788187
description UPF0202 protein At1g10490-like
nr
ID XP_006585310.1
description PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
swissprot
ID Q9XIK4
description UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2
trembl
ID A0A0B2RAG0
description UPF0202 protein OS=Glycine soja GN=glysoja_008459 PE=4 SV=1
Gene Ontology
ID GO:0005622
description upf0202 protein at1g10490-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049436_010 0.0 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
2 Hb_001031_090 0.0853441247 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
3 Hb_004934_050 0.0931604958 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
4 Hb_000905_170 0.0985676731 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_000920_300 0.0989000938 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
6 Hb_002477_090 0.0996102789 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
7 Hb_119530_010 0.1025429458 - - -
8 Hb_001104_110 0.1033848471 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
9 Hb_000631_120 0.1034220125 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
10 Hb_001123_050 0.1037075115 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001105_160 0.1066863131 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
12 Hb_005081_020 0.1076568014 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
13 Hb_000213_120 0.1086435232 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_002344_060 0.110971899 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
15 Hb_032808_030 0.1112470926 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_083799_010 0.11255347 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_003849_240 0.1128378262 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_004994_090 0.1151462459 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
19 Hb_000227_060 0.1156720098 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
20 Hb_016734_060 0.1157661707 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_049436_010 Hb_049436_010 Hb_001031_090 Hb_001031_090 Hb_049436_010--Hb_001031_090 Hb_004934_050 Hb_004934_050 Hb_049436_010--Hb_004934_050 Hb_000905_170 Hb_000905_170 Hb_049436_010--Hb_000905_170 Hb_000920_300 Hb_000920_300 Hb_049436_010--Hb_000920_300 Hb_002477_090 Hb_002477_090 Hb_049436_010--Hb_002477_090 Hb_119530_010 Hb_119530_010 Hb_049436_010--Hb_119530_010 Hb_016734_060 Hb_016734_060 Hb_001031_090--Hb_016734_060 Hb_004109_380 Hb_004109_380 Hb_001031_090--Hb_004109_380 Hb_004223_160 Hb_004223_160 Hb_001031_090--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001031_090--Hb_008948_140 Hb_002889_020 Hb_002889_020 Hb_001031_090--Hb_002889_020 Hb_004934_050--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_004934_050--Hb_000340_490 Hb_004934_050--Hb_000920_300 Hb_127743_010 Hb_127743_010 Hb_004934_050--Hb_127743_010 Hb_002456_010 Hb_002456_010 Hb_004934_050--Hb_002456_010 Hb_004208_050 Hb_004208_050 Hb_004934_050--Hb_004208_050 Hb_000227_060 Hb_000227_060 Hb_000905_170--Hb_000227_060 Hb_000856_180 Hb_000856_180 Hb_000905_170--Hb_000856_180 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000009_330 Hb_000009_330 Hb_000905_170--Hb_000009_330 Hb_003913_070 Hb_003913_070 Hb_000920_300--Hb_003913_070 Hb_000920_300--Hb_002456_010 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100 Hb_002477_090--Hb_003913_070 Hb_001761_130 Hb_001761_130 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_000106_120 Hb_000106_120 Hb_002477_090--Hb_000106_120 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_002400_410 Hb_002400_410 Hb_119530_010--Hb_002400_410 Hb_119530_010--Hb_000920_300 Hb_007416_120 Hb_007416_120 Hb_119530_010--Hb_007416_120 Hb_007747_080 Hb_007747_080 Hb_119530_010--Hb_007747_080 Hb_000504_070 Hb_000504_070 Hb_119530_010--Hb_000504_070 Hb_001268_410 Hb_001268_410 Hb_119530_010--Hb_001268_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18628 8.58741 2.9382 4.54176 2.75882 5.31773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74989 4.11815 2.39934 10.3057 3.51975

CAGE analysis