Hb_000227_060

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig227: 41540-42307
Sequence    

Annotation

kegg
ID pop:POPTR_0010s03730g
description hypothetical protein
nr
ID XP_006378139.1
description hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
swissprot
ID Q8L4B2
description Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1
trembl
ID U5G109
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s03730g PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit c-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23586: 40285-41194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_060 0.0 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
2 Hb_000905_170 0.0802545101 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
3 Hb_000200_280 0.1132840703 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
4 Hb_000390_100 0.1141407342 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
5 Hb_049436_010 0.1156720098 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
6 Hb_001514_130 0.1169735085 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
7 Hb_000856_180 0.1177158612 - - calcium-dependent protein kinase [Hevea brasiliensis]
8 Hb_032808_030 0.1182275471 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_000925_160 0.1194392235 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
10 Hb_001266_100 0.1203567008 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
11 Hb_005214_090 0.1206752111 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
12 Hb_000009_330 0.1233648051 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
13 Hb_000140_480 0.1239890385 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
14 Hb_003071_020 0.1257102957 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
15 Hb_011930_070 0.1258960934 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
16 Hb_000236_410 0.1268649094 - - Paramyosin, putative [Ricinus communis]
17 Hb_010487_020 0.1274873692 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
18 Hb_002400_400 0.1292259354 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
19 Hb_000213_120 0.129583627 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001269_690 0.1326601752 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000227_060 Hb_000227_060 Hb_000905_170 Hb_000905_170 Hb_000227_060--Hb_000905_170 Hb_000200_280 Hb_000200_280 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_049436_010 Hb_049436_010 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000856_180 Hb_000856_180 Hb_000227_060--Hb_000856_180 Hb_000905_170--Hb_049436_010 Hb_000905_170--Hb_000856_180 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000009_330 Hb_000009_330 Hb_000905_170--Hb_000009_330 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_002827_020 Hb_002827_020 Hb_000200_280--Hb_002827_020 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_011716_090 Hb_011716_090 Hb_000200_280--Hb_011716_090 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030 Hb_000925_160 Hb_000925_160 Hb_000390_100--Hb_000925_160 Hb_000627_180 Hb_000627_180 Hb_000390_100--Hb_000627_180 Hb_012799_120 Hb_012799_120 Hb_000390_100--Hb_012799_120 Hb_002301_380 Hb_002301_380 Hb_000390_100--Hb_002301_380 Hb_000390_100--Hb_000200_280 Hb_001031_090 Hb_001031_090 Hb_049436_010--Hb_001031_090 Hb_004934_050 Hb_004934_050 Hb_049436_010--Hb_004934_050 Hb_000920_300 Hb_000920_300 Hb_049436_010--Hb_000920_300 Hb_002477_090 Hb_002477_090 Hb_049436_010--Hb_002477_090 Hb_119530_010 Hb_119530_010 Hb_049436_010--Hb_119530_010 Hb_001514_130--Hb_000200_280 Hb_001575_010 Hb_001575_010 Hb_001514_130--Hb_001575_010 Hb_005214_090 Hb_005214_090 Hb_001514_130--Hb_005214_090 Hb_004218_030 Hb_004218_030 Hb_001514_130--Hb_004218_030 Hb_000684_290 Hb_000684_290 Hb_001514_130--Hb_000684_290 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_002046_020 Hb_002046_020 Hb_000856_180--Hb_002046_020 Hb_000236_410 Hb_000236_410 Hb_000856_180--Hb_000236_410 Hb_000856_180--Hb_000009_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4125 46.5586 6.1768 13.5539 15.2845 19.6189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0243 18.1555 13.631 38.9776 10.3051

CAGE analysis