Hb_011930_070

Information

Type -
Description -
Location Contig11930: 45944-58193
Sequence    

Annotation

kegg
ID rcu:RCOM_0698800
description AMP deaminase, putative (EC:3.5.4.6)
nr
ID XP_012091964.1
description PREDICTED: probable AMP deaminase [Jatropha curcas]
swissprot
ID O80452
description AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2
trembl
ID A0A067JBU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21713 PE=4 SV=1
Gene Ontology
ID GO:0003876
description probable amp deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05705: 45997-47440 , PASA_asmbl_05706: 47442-48609 , PASA_asmbl_05708: 57061-57796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_070 0.0 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
2 Hb_002005_090 0.1072806568 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012799_120 0.1102218207 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
4 Hb_001019_180 0.1107158327 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
5 Hb_000905_170 0.1114983237 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_002110_030 0.1222763459 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
7 Hb_000227_060 0.1258960934 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
8 Hb_000169_170 0.1260152982 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
9 Hb_000390_100 0.1267194502 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
10 Hb_000200_280 0.1282029823 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
11 Hb_003060_090 0.1305741405 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
12 Hb_003071_020 0.1309132441 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
13 Hb_000640_130 0.1314915779 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
14 Hb_000009_330 0.1369208717 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
15 Hb_006683_040 0.1379433027 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_000856_180 0.138848587 - - calcium-dependent protein kinase [Hevea brasiliensis]
17 Hb_002827_020 0.1418885233 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
18 Hb_003849_240 0.142651332 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_000932_070 0.1438987247 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
20 Hb_001269_690 0.1448570328 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011930_070 Hb_011930_070 Hb_002005_090 Hb_002005_090 Hb_011930_070--Hb_002005_090 Hb_012799_120 Hb_012799_120 Hb_011930_070--Hb_012799_120 Hb_001019_180 Hb_001019_180 Hb_011930_070--Hb_001019_180 Hb_000905_170 Hb_000905_170 Hb_011930_070--Hb_000905_170 Hb_002110_030 Hb_002110_030 Hb_011930_070--Hb_002110_030 Hb_000227_060 Hb_000227_060 Hb_011930_070--Hb_000227_060 Hb_005048_100 Hb_005048_100 Hb_002005_090--Hb_005048_100 Hb_003849_240 Hb_003849_240 Hb_002005_090--Hb_003849_240 Hb_000823_030 Hb_000823_030 Hb_002005_090--Hb_000823_030 Hb_000069_410 Hb_000069_410 Hb_002005_090--Hb_000069_410 Hb_003058_060 Hb_003058_060 Hb_002005_090--Hb_003058_060 Hb_001575_010 Hb_001575_010 Hb_002005_090--Hb_001575_010 Hb_012799_120--Hb_001019_180 Hb_000304_050 Hb_000304_050 Hb_012799_120--Hb_000304_050 Hb_012799_120--Hb_002110_030 Hb_000820_120 Hb_000820_120 Hb_012799_120--Hb_000820_120 Hb_000441_070 Hb_000441_070 Hb_012799_120--Hb_000441_070 Hb_000340_110 Hb_000340_110 Hb_012799_120--Hb_000340_110 Hb_000330_040 Hb_000330_040 Hb_001019_180--Hb_000330_040 Hb_001019_180--Hb_002110_030 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_000905_170--Hb_000227_060 Hb_049436_010 Hb_049436_010 Hb_000905_170--Hb_049436_010 Hb_000856_180 Hb_000856_180 Hb_000905_170--Hb_000856_180 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000009_330 Hb_000009_330 Hb_000905_170--Hb_000009_330 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_073562_010 Hb_073562_010 Hb_002110_030--Hb_073562_010 Hb_002110_030--Hb_000330_040 Hb_011512_090 Hb_011512_090 Hb_002110_030--Hb_011512_090 Hb_002110_030--Hb_001575_010 Hb_000200_280 Hb_000200_280 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000227_060--Hb_000856_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.09573 28.7713 6.33548 5.27613 10.6312 10.0992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88169 6.38863 7.70026 23.4416 3.30722

CAGE analysis