Hb_000390_100

Information

Type -
Description -
Location Contig390: 131049-133130
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05830g
description POPTRDRAFT_826167; alpha-hydroxynitrile lyase family protein
nr
ID XP_002325446.1
description alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
swissprot
ID Q9SK86
description Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1
trembl
ID B9IPW3
description Alpha-hydroxynitrile lyase family protein OS=Populus trichocarpa GN=POPTR_0019s05830g PE=3 SV=1
Gene Ontology
ID GO:0008270
description alpha-hydroxynitrile lyase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39085: 131297-136376 , PASA_asmbl_39088: 131292-132006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_100 0.0 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
2 Hb_000227_060 0.1141407342 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
3 Hb_000925_160 0.116124933 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
4 Hb_000627_180 0.1168558036 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012799_120 0.1185804704 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
6 Hb_002301_380 0.1202838296 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
7 Hb_000200_280 0.1215180117 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
8 Hb_011930_070 0.1267194502 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
9 Hb_000243_380 0.1270783878 - - PREDICTED: histone H1 [Jatropha curcas]
10 Hb_000976_040 0.127375899 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
11 Hb_000932_070 0.1369700187 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
12 Hb_001269_690 0.1372824877 - - conserved hypothetical protein [Ricinus communis]
13 Hb_164010_070 0.1383790781 - - Paramyosin, putative [Ricinus communis]
14 Hb_005214_090 0.1392290927 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
15 Hb_061411_010 0.1398226087 - - PREDICTED: ATPase WRNIP1 [Jatropha curcas]
16 Hb_000853_030 0.1416627289 - - sucrose synthase 2 [Hevea brasiliensis]
17 Hb_000640_130 0.1422446914 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
18 Hb_001055_030 0.1431115964 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
19 Hb_000215_100 0.1439691173 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005288_010 0.1442594048 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000390_100 Hb_000390_100 Hb_000227_060 Hb_000227_060 Hb_000390_100--Hb_000227_060 Hb_000925_160 Hb_000925_160 Hb_000390_100--Hb_000925_160 Hb_000627_180 Hb_000627_180 Hb_000390_100--Hb_000627_180 Hb_012799_120 Hb_012799_120 Hb_000390_100--Hb_012799_120 Hb_002301_380 Hb_002301_380 Hb_000390_100--Hb_002301_380 Hb_000200_280 Hb_000200_280 Hb_000390_100--Hb_000200_280 Hb_000905_170 Hb_000905_170 Hb_000227_060--Hb_000905_170 Hb_000227_060--Hb_000200_280 Hb_049436_010 Hb_049436_010 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000856_180 Hb_000856_180 Hb_000227_060--Hb_000856_180 Hb_000925_160--Hb_000627_180 Hb_000735_160 Hb_000735_160 Hb_000925_160--Hb_000735_160 Hb_144744_010 Hb_144744_010 Hb_000925_160--Hb_144744_010 Hb_000236_410 Hb_000236_410 Hb_000925_160--Hb_000236_410 Hb_001205_030 Hb_001205_030 Hb_000925_160--Hb_001205_030 Hb_000622_250 Hb_000622_250 Hb_000627_180--Hb_000622_250 Hb_000627_180--Hb_000236_410 Hb_000069_410 Hb_000069_410 Hb_000627_180--Hb_000069_410 Hb_002636_180 Hb_002636_180 Hb_000627_180--Hb_002636_180 Hb_005214_090 Hb_005214_090 Hb_000627_180--Hb_005214_090 Hb_001019_180 Hb_001019_180 Hb_012799_120--Hb_001019_180 Hb_000304_050 Hb_000304_050 Hb_012799_120--Hb_000304_050 Hb_002110_030 Hb_002110_030 Hb_012799_120--Hb_002110_030 Hb_000820_120 Hb_000820_120 Hb_012799_120--Hb_000820_120 Hb_000441_070 Hb_000441_070 Hb_012799_120--Hb_000441_070 Hb_000340_110 Hb_000340_110 Hb_012799_120--Hb_000340_110 Hb_002301_380--Hb_000856_180 Hb_164945_040 Hb_164945_040 Hb_002301_380--Hb_164945_040 Hb_000003_220 Hb_000003_220 Hb_002301_380--Hb_000003_220 Hb_002301_380--Hb_000925_160 Hb_002301_380--Hb_000227_060 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_002827_020 Hb_002827_020 Hb_000200_280--Hb_002827_020 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_011716_090 Hb_011716_090 Hb_000200_280--Hb_011716_090 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_000200_280--Hb_002110_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9026 50.4797 6.56763 9.44921 17.828 15.5142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5954 8.38848 13.1369 32.9097 6.81176

CAGE analysis