Hb_000925_160

Information

Type -
Description -
Location Contig925: 169935-180204
Sequence    

Annotation

kegg
ID rcu:RCOM_0322290
description galactolipid galactosyltransferase, putative
nr
ID XP_012074320.1
description PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q6DW74
description Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1
trembl
ID A0A067KV18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08759 PE=4 SV=1
Gene Ontology
ID GO:0005739
description digalactosyldiacylglycerol synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62603: 169945-179666 , PASA_asmbl_62604: 176088-176468 , PASA_asmbl_62605: 176478-176884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000925_160 0.0 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
2 Hb_000627_180 0.097840025 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000735_160 0.1037428598 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
4 Hb_144744_010 0.1073198754 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
5 Hb_000236_410 0.1101607881 - - Paramyosin, putative [Ricinus communis]
6 Hb_001205_030 0.1140415688 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
7 Hb_000390_100 0.116124933 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
8 Hb_007054_040 0.11694204 - - PREDICTED: protein RST1 [Jatropha curcas]
9 Hb_000227_060 0.1194392235 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
10 Hb_012799_120 0.1199430942 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
11 Hb_002872_040 0.1204283417 - - pumilio, putative [Ricinus communis]
12 Hb_010222_070 0.1213840959 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
13 Hb_003752_100 0.1216275725 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
14 Hb_000373_100 0.1216680495 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
15 Hb_000169_170 0.1235140714 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
16 Hb_005288_010 0.1248897817 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000347_120 0.1254549417 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
18 Hb_005389_160 0.1256107577 - - PREDICTED: casein kinase I [Jatropha curcas]
19 Hb_000574_540 0.1261659933 - - ATP binding protein, putative [Ricinus communis]
20 Hb_003060_090 0.126309777 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]

Gene co-expression network

sample Hb_000925_160 Hb_000925_160 Hb_000627_180 Hb_000627_180 Hb_000925_160--Hb_000627_180 Hb_000735_160 Hb_000735_160 Hb_000925_160--Hb_000735_160 Hb_144744_010 Hb_144744_010 Hb_000925_160--Hb_144744_010 Hb_000236_410 Hb_000236_410 Hb_000925_160--Hb_000236_410 Hb_001205_030 Hb_001205_030 Hb_000925_160--Hb_001205_030 Hb_000390_100 Hb_000390_100 Hb_000925_160--Hb_000390_100 Hb_000622_250 Hb_000622_250 Hb_000627_180--Hb_000622_250 Hb_000627_180--Hb_000236_410 Hb_000069_410 Hb_000069_410 Hb_000627_180--Hb_000069_410 Hb_002636_180 Hb_002636_180 Hb_000627_180--Hb_002636_180 Hb_005214_090 Hb_005214_090 Hb_000627_180--Hb_005214_090 Hb_004371_010 Hb_004371_010 Hb_000735_160--Hb_004371_010 Hb_010487_020 Hb_010487_020 Hb_000735_160--Hb_010487_020 Hb_000347_120 Hb_000347_120 Hb_000735_160--Hb_000347_120 Hb_000094_320 Hb_000094_320 Hb_000735_160--Hb_000094_320 Hb_001080_230 Hb_001080_230 Hb_000735_160--Hb_001080_230 Hb_009028_010 Hb_009028_010 Hb_144744_010--Hb_009028_010 Hb_144744_010--Hb_000236_410 Hb_001935_140 Hb_001935_140 Hb_144744_010--Hb_001935_140 Hb_144744_010--Hb_004371_010 Hb_000406_110 Hb_000406_110 Hb_144744_010--Hb_000406_110 Hb_003060_090 Hb_003060_090 Hb_144744_010--Hb_003060_090 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_000236_410--Hb_001935_140 Hb_010921_030 Hb_010921_030 Hb_001205_030--Hb_010921_030 Hb_000345_200 Hb_000345_200 Hb_001205_030--Hb_000345_200 Hb_003078_050 Hb_003078_050 Hb_001205_030--Hb_003078_050 Hb_126380_010 Hb_126380_010 Hb_001205_030--Hb_126380_010 Hb_189208_020 Hb_189208_020 Hb_001205_030--Hb_189208_020 Hb_000227_060 Hb_000227_060 Hb_000390_100--Hb_000227_060 Hb_000390_100--Hb_000627_180 Hb_012799_120 Hb_012799_120 Hb_000390_100--Hb_012799_120 Hb_002301_380 Hb_002301_380 Hb_000390_100--Hb_002301_380 Hb_000200_280 Hb_000200_280 Hb_000390_100--Hb_000200_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6891 51.0489 9.77989 10.8782 18.2145 16.6271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1139 10.0647 15.8283 22.7131 11.3842

CAGE analysis