Hb_010921_030

Information

Type transcription factor
Description TF Family: PHD
Location Contig10921: 35601-38522
Sequence    

Annotation

kegg
ID rcu:RCOM_1148650
description DNA binding protein, putative
nr
ID XP_012072514.1
description PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
swissprot
ID Q9ZUA9
description PHD finger protein At2g01810 OS=Arabidopsis thaliana GN=At2g01810 PE=3 SV=1
trembl
ID A0A067KPT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04795 PE=4 SV=1
Gene Ontology
ID GO:0005515
description phd finger protein male meiocyte death 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010921_030 0.0 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
2 Hb_001205_030 0.1083092527 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
3 Hb_000953_050 0.1120958591 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
4 Hb_000243_380 0.1144590067 - - PREDICTED: histone H1 [Jatropha curcas]
5 Hb_029223_050 0.1197949827 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
6 Hb_000003_550 0.1205068013 - - -
7 Hb_003752_100 0.1228899078 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
8 Hb_010079_030 0.1276846815 - - -
9 Hb_001828_130 0.1291972738 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
10 Hb_000442_010 0.1304549269 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
11 Hb_004440_040 0.1311403992 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_027506_020 0.1339613436 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
13 Hb_002097_200 0.1345612146 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
14 Hb_000340_110 0.1357368134 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
15 Hb_003078_050 0.1363533887 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
16 Hb_003055_060 0.1370313245 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
17 Hb_000925_160 0.1373089742 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
18 Hb_000373_100 0.1375972025 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
19 Hb_000256_140 0.1384413777 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
20 Hb_000347_120 0.1394337498 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]

Gene co-expression network

sample Hb_010921_030 Hb_010921_030 Hb_001205_030 Hb_001205_030 Hb_010921_030--Hb_001205_030 Hb_000953_050 Hb_000953_050 Hb_010921_030--Hb_000953_050 Hb_000243_380 Hb_000243_380 Hb_010921_030--Hb_000243_380 Hb_029223_050 Hb_029223_050 Hb_010921_030--Hb_029223_050 Hb_000003_550 Hb_000003_550 Hb_010921_030--Hb_000003_550 Hb_003752_100 Hb_003752_100 Hb_010921_030--Hb_003752_100 Hb_000925_160 Hb_000925_160 Hb_001205_030--Hb_000925_160 Hb_000345_200 Hb_000345_200 Hb_001205_030--Hb_000345_200 Hb_003078_050 Hb_003078_050 Hb_001205_030--Hb_003078_050 Hb_126380_010 Hb_126380_010 Hb_001205_030--Hb_126380_010 Hb_189208_020 Hb_189208_020 Hb_001205_030--Hb_189208_020 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_005496_180 Hb_005496_180 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_002572_050 Hb_002572_050 Hb_000953_050--Hb_002572_050 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_001511_110 Hb_001511_110 Hb_000243_380--Hb_001511_110 Hb_000340_110 Hb_000340_110 Hb_000243_380--Hb_000340_110 Hb_000243_380--Hb_029223_050 Hb_001053_030 Hb_001053_030 Hb_000243_380--Hb_001053_030 Hb_002745_010 Hb_002745_010 Hb_000243_380--Hb_002745_010 Hb_144824_010 Hb_144824_010 Hb_000243_380--Hb_144824_010 Hb_029223_050--Hb_000340_110 Hb_029223_050--Hb_001511_110 Hb_026198_040 Hb_026198_040 Hb_029223_050--Hb_026198_040 Hb_001141_370 Hb_001141_370 Hb_029223_050--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_001104_190 Hb_001104_190 Hb_000003_550--Hb_001104_190 Hb_006117_080 Hb_006117_080 Hb_000003_550--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_000003_550--Hb_000321_150 Hb_029142_050 Hb_029142_050 Hb_000003_550--Hb_029142_050 Hb_002007_160 Hb_002007_160 Hb_000003_550--Hb_002007_160 Hb_000866_120 Hb_000866_120 Hb_000003_550--Hb_000866_120 Hb_003082_010 Hb_003082_010 Hb_003752_100--Hb_003082_010 Hb_004109_030 Hb_004109_030 Hb_003752_100--Hb_004109_030 Hb_001864_060 Hb_001864_060 Hb_003752_100--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_003752_100--Hb_003175_030 Hb_001828_130 Hb_001828_130 Hb_003752_100--Hb_001828_130 Hb_012055_060 Hb_012055_060 Hb_003752_100--Hb_012055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.457304 1.52698 0.221118 0.276868 0.522311 0.258757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.319393 0.452362 0.445408 0.339778 0.248226

CAGE analysis