Hb_126380_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig126380: 8875-9534
Sequence    

Annotation

kegg
ID rcu:RCOM_1117180
description ATP binding protein, putative (EC:3.1.3.16)
nr
ID XP_002525325.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9SH56
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1117180 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126380_010 0.0 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
2 Hb_000345_200 0.0939963404 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
3 Hb_001794_060 0.130423498 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001205_030 0.1334367995 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
5 Hb_008511_100 0.1444988091 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
6 Hb_189208_020 0.1472839371 - - LRX2, putative [Ricinus communis]
7 Hb_002097_200 0.1485125661 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_001369_570 0.1500087081 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
9 Hb_002572_050 0.1515988071 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
10 Hb_000451_070 0.1587038931 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000953_050 0.1664607416 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
12 Hb_001153_180 0.1703273578 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
13 Hb_010921_030 0.170610044 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
14 Hb_088753_010 0.1748786867 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
15 Hb_000649_240 0.1766256427 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
16 Hb_001183_010 0.1775787828 - - -
17 Hb_000432_040 0.1780447469 - - PREDICTED: remorin-like [Jatropha curcas]
18 Hb_001894_050 0.1802106529 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
19 Hb_003929_130 0.1812168771 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
20 Hb_000003_550 0.1845908823 - - -

Gene co-expression network

sample Hb_126380_010 Hb_126380_010 Hb_000345_200 Hb_000345_200 Hb_126380_010--Hb_000345_200 Hb_001794_060 Hb_001794_060 Hb_126380_010--Hb_001794_060 Hb_001205_030 Hb_001205_030 Hb_126380_010--Hb_001205_030 Hb_008511_100 Hb_008511_100 Hb_126380_010--Hb_008511_100 Hb_189208_020 Hb_189208_020 Hb_126380_010--Hb_189208_020 Hb_002097_200 Hb_002097_200 Hb_126380_010--Hb_002097_200 Hb_000345_200--Hb_001205_030 Hb_000732_250 Hb_000732_250 Hb_000345_200--Hb_000732_250 Hb_000345_200--Hb_189208_020 Hb_001894_050 Hb_001894_050 Hb_000345_200--Hb_001894_050 Hb_000345_200--Hb_001794_060 Hb_002572_050 Hb_002572_050 Hb_001794_060--Hb_002572_050 Hb_001369_570 Hb_001369_570 Hb_001794_060--Hb_001369_570 Hb_001794_060--Hb_008511_100 Hb_001944_020 Hb_001944_020 Hb_001794_060--Hb_001944_020 Hb_001433_140 Hb_001433_140 Hb_001794_060--Hb_001433_140 Hb_010921_030 Hb_010921_030 Hb_001205_030--Hb_010921_030 Hb_000925_160 Hb_000925_160 Hb_001205_030--Hb_000925_160 Hb_003078_050 Hb_003078_050 Hb_001205_030--Hb_003078_050 Hb_001205_030--Hb_189208_020 Hb_008511_100--Hb_002097_200 Hb_000953_050 Hb_000953_050 Hb_008511_100--Hb_000953_050 Hb_001288_070 Hb_001288_070 Hb_008511_100--Hb_001288_070 Hb_008511_100--Hb_002572_050 Hb_005496_180 Hb_005496_180 Hb_008511_100--Hb_005496_180 Hb_008511_100--Hb_189208_020 Hb_189208_020--Hb_002097_200 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0800273 0.542444 0.0322852 0.0794007 0.0778212 0.0711757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185398 0.218585 0.128481 0.148913 0.142264

CAGE analysis