Hb_001288_070

Information

Type -
Description -
Location Contig1288: 94942-114067
Sequence    

Annotation

kegg
ID rcu:RCOM_0706340
description puromycin-sensitive aminopeptidase, putative (EC:3.4.11.2)
nr
ID XP_012077233.1
description PREDICTED: aminopeptidase M1-like [Jatropha curcas]
swissprot
ID Q8VZH2
description Aminopeptidase M1 OS=Arabidopsis thaliana GN=APM1 PE=1 SV=1
trembl
ID A0A067KP44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07636 PE=4 SV=1
Gene Ontology
ID GO:0070011
description aminopeptidase m1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001288_070 0.0 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
2 Hb_000116_210 0.1122560515 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
3 Hb_000120_160 0.1181858144 - - unnamed protein product [Vitis vinifera]
4 Hb_008511_100 0.1291959531 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
5 Hb_000805_230 0.1308803237 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
6 Hb_000866_090 0.1324684852 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
7 Hb_002915_070 0.1337434168 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
8 Hb_002154_020 0.1370642101 - - protein with unknown function [Ricinus communis]
9 Hb_000062_080 0.1372268225 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
10 Hb_005496_180 0.1378404435 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
11 Hb_007576_200 0.137863885 - - amino acid transporter, putative [Ricinus communis]
12 Hb_000802_190 0.1378708577 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
13 Hb_000059_130 0.1381978908 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
14 Hb_000448_060 0.1390656831 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
15 Hb_000866_370 0.1445034877 - - synaptotagmin, putative [Ricinus communis]
16 Hb_000049_090 0.1445233131 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
17 Hb_002471_140 0.1482362394 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
18 Hb_011861_080 0.1492209722 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
19 Hb_002249_050 0.1493588652 - - Auxin response factor, putative [Ricinus communis]
20 Hb_001080_140 0.1494737183 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001288_070 Hb_001288_070 Hb_000116_210 Hb_000116_210 Hb_001288_070--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_001288_070--Hb_000120_160 Hb_008511_100 Hb_008511_100 Hb_001288_070--Hb_008511_100 Hb_000805_230 Hb_000805_230 Hb_001288_070--Hb_000805_230 Hb_000866_090 Hb_000866_090 Hb_001288_070--Hb_000866_090 Hb_002915_070 Hb_002915_070 Hb_001288_070--Hb_002915_070 Hb_002876_250 Hb_002876_250 Hb_000116_210--Hb_002876_250 Hb_000116_210--Hb_000805_230 Hb_000116_210--Hb_000120_160 Hb_002154_020 Hb_002154_020 Hb_000116_210--Hb_002154_020 Hb_023344_060 Hb_023344_060 Hb_000116_210--Hb_023344_060 Hb_000120_160--Hb_000805_230 Hb_000120_160--Hb_002876_250 Hb_005496_180 Hb_005496_180 Hb_000120_160--Hb_005496_180 Hb_000120_160--Hb_002154_020 Hb_002097_200 Hb_002097_200 Hb_008511_100--Hb_002097_200 Hb_000953_050 Hb_000953_050 Hb_008511_100--Hb_000953_050 Hb_002572_050 Hb_002572_050 Hb_008511_100--Hb_002572_050 Hb_008511_100--Hb_005496_180 Hb_189208_020 Hb_189208_020 Hb_008511_100--Hb_189208_020 Hb_000805_230--Hb_002915_070 Hb_000179_230 Hb_000179_230 Hb_000805_230--Hb_000179_230 Hb_004032_310 Hb_004032_310 Hb_000805_230--Hb_004032_310 Hb_000448_060 Hb_000448_060 Hb_000805_230--Hb_000448_060 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_002915_070--Hb_000448_060 Hb_002915_070--Hb_000179_230 Hb_003752_120 Hb_003752_120 Hb_002915_070--Hb_003752_120 Hb_002915_070--Hb_004032_310 Hb_103788_010 Hb_103788_010 Hb_002915_070--Hb_103788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.061563 0.695937 0.152448 0.167591 0.0654061 0.117333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0906913 0.0713665 0.181905 0.33503 0.152158

CAGE analysis