Hb_000645_240

Information

Type -
Description -
Location Contig645: 200933-216614
Sequence    

Annotation

kegg
ID rcu:RCOM_0999840
description AMP dependent ligase, putative (EC:6.2.1.26)
nr
ID XP_002519195.1
description AMP dependent ligase, putative [Ricinus communis]
swissprot
ID Q8VZF1
description Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1
trembl
ID A0A0E0CUR6
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0003987
description acetate butyrate-- ligase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52282: 200910-203948 , PASA_asmbl_52283: 210555-216591
cDNA
(Sanger)
(ID:Location)		 009_C19.ab1: 210564-212506

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_240 0.0 - - AMP dependent ligase, putative [Ricinus communis]
2 Hb_000866_090 0.0844697542 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
3 Hb_000022_180 0.1122023393 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_004976_040 0.1268053748 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
5 Hb_000866_370 0.1356338162 - - synaptotagmin, putative [Ricinus communis]
6 Hb_000081_120 0.138889481 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
7 Hb_000345_340 0.1415311619 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
8 Hb_008667_060 0.1430768701 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
9 Hb_000313_370 0.1451214014 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_001946_150 0.1484040536 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001699_150 0.1502566978 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
12 Hb_002471_140 0.1509134993 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
13 Hb_000010_350 0.1513399599 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
14 Hb_000789_240 0.1540879092 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
15 Hb_011310_200 0.1543846954 - - grr1, plant, putative [Ricinus communis]
16 Hb_001288_070 0.1551068475 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
17 Hb_001251_060 0.1571209606 - - aldo/keto reductase AKR [Manihot esculenta]
18 Hb_001080_140 0.1575645285 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
19 Hb_020805_170 0.1594577728 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
20 Hb_000216_020 0.1600712783 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]

Gene co-expression network

sample Hb_000645_240 Hb_000645_240 Hb_000866_090 Hb_000866_090 Hb_000645_240--Hb_000866_090 Hb_000022_180 Hb_000022_180 Hb_000645_240--Hb_000022_180 Hb_004976_040 Hb_004976_040 Hb_000645_240--Hb_004976_040 Hb_000866_370 Hb_000866_370 Hb_000645_240--Hb_000866_370 Hb_000081_120 Hb_000081_120 Hb_000645_240--Hb_000081_120 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_000789_240 Hb_000789_240 Hb_000022_180--Hb_000789_240 Hb_011861_080 Hb_011861_080 Hb_000022_180--Hb_011861_080 Hb_000022_180--Hb_000866_370 Hb_000022_180--Hb_000866_090 Hb_004108_170 Hb_004108_170 Hb_000022_180--Hb_004108_170 Hb_008226_100 Hb_008226_100 Hb_004976_040--Hb_008226_100 Hb_000010_350 Hb_000010_350 Hb_004976_040--Hb_000010_350 Hb_004976_040--Hb_000866_090 Hb_004126_080 Hb_004126_080 Hb_004976_040--Hb_004126_080 Hb_089100_040 Hb_089100_040 Hb_004976_040--Hb_089100_040 Hb_117895_010 Hb_117895_010 Hb_000866_370--Hb_117895_010 Hb_000866_370--Hb_000010_350 Hb_000866_370--Hb_089100_040 Hb_002233_020 Hb_002233_020 Hb_000866_370--Hb_002233_020 Hb_011310_200 Hb_011310_200 Hb_000866_370--Hb_011310_200 Hb_000302_200 Hb_000302_200 Hb_000081_120--Hb_000302_200 Hb_000002_270 Hb_000002_270 Hb_000081_120--Hb_000002_270 Hb_000792_040 Hb_000792_040 Hb_000081_120--Hb_000792_040 Hb_001322_180 Hb_001322_180 Hb_000081_120--Hb_001322_180 Hb_000227_330 Hb_000227_330 Hb_000081_120--Hb_000227_330 Hb_000345_340--Hb_002471_140 Hb_000345_340--Hb_008667_060 Hb_000271_120 Hb_000271_120 Hb_000345_340--Hb_000271_120 Hb_000345_340--Hb_001080_140 Hb_000345_340--Hb_000866_090 Hb_000059_130 Hb_000059_130 Hb_000345_340--Hb_000059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.49936 73.0856 12.4846 12.6051 10.8343 9.54256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.56037 5.79957 5.65172 53.8666 17.1753

CAGE analysis