Hb_000081_120

Information

Type -
Description -
Location Contig81: 247693-255026
Sequence    

Annotation

kegg
ID rcu:RCOM_0854050
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative (EC:3.6.3.6)
nr
ID XP_002517457.1
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
swissprot
ID Q9SU58
description ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=2 SV=2
trembl
ID B9RUL2
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative OS=Ricinus communis GN=RCOM_0854050 PE=4 SV=1
Gene Ontology
ID GO:0016021
description h(\+)-transporting atpase plant fungi plasma membrane

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59202: 247691-248426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000081_120 0.0 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
2 Hb_000302_200 0.1263052504 - - ornithine cyclodeaminase, putative [Ricinus communis]
3 Hb_000002_270 0.1383558387 - - hypothetical protein VITISV_043897 [Vitis vinifera]
4 Hb_000792_040 0.1384756374 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
5 Hb_000645_240 0.138889481 - - AMP dependent ligase, putative [Ricinus communis]
6 Hb_001322_180 0.1392884275 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
7 Hb_000227_330 0.1394005179 - - Acyl-CoA synthetase [Ricinus communis]
8 Hb_001477_020 0.140741624 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
9 Hb_000866_090 0.1436820395 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
10 Hb_000684_360 0.1445861724 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
11 Hb_004218_250 0.1454771817 - - PREDICTED: beta-galactosidase [Jatropha curcas]
12 Hb_000094_370 0.146238848 - - -
13 Hb_001799_190 0.1466285376 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
14 Hb_000200_110 0.1476131998 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
15 Hb_002631_040 0.1487732146 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
16 Hb_004109_380 0.1492168289 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
17 Hb_000789_240 0.1496838106 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
18 Hb_000220_120 0.1497162482 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
19 Hb_003849_240 0.1498461691 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_001080_140 0.1503939032 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000081_120 Hb_000081_120 Hb_000302_200 Hb_000302_200 Hb_000081_120--Hb_000302_200 Hb_000002_270 Hb_000002_270 Hb_000081_120--Hb_000002_270 Hb_000792_040 Hb_000792_040 Hb_000081_120--Hb_000792_040 Hb_000645_240 Hb_000645_240 Hb_000081_120--Hb_000645_240 Hb_001322_180 Hb_001322_180 Hb_000081_120--Hb_001322_180 Hb_000227_330 Hb_000227_330 Hb_000081_120--Hb_000227_330 Hb_000302_200--Hb_000792_040 Hb_004994_090 Hb_004994_090 Hb_000302_200--Hb_004994_090 Hb_006501_160 Hb_006501_160 Hb_000302_200--Hb_006501_160 Hb_001031_090 Hb_001031_090 Hb_000302_200--Hb_001031_090 Hb_005215_020 Hb_005215_020 Hb_000302_200--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000302_200--Hb_002995_040 Hb_111985_040 Hb_111985_040 Hb_000002_270--Hb_111985_040 Hb_000002_270--Hb_000302_200 Hb_000002_270--Hb_000792_040 Hb_003398_070 Hb_003398_070 Hb_000002_270--Hb_003398_070 Hb_007576_200 Hb_007576_200 Hb_000002_270--Hb_007576_200 Hb_185830_070 Hb_185830_070 Hb_000792_040--Hb_185830_070 Hb_004450_070 Hb_004450_070 Hb_000792_040--Hb_004450_070 Hb_000792_040--Hb_007576_200 Hb_000792_040--Hb_006501_160 Hb_008246_020 Hb_008246_020 Hb_000792_040--Hb_008246_020 Hb_000866_090 Hb_000866_090 Hb_000645_240--Hb_000866_090 Hb_000022_180 Hb_000022_180 Hb_000645_240--Hb_000022_180 Hb_004976_040 Hb_004976_040 Hb_000645_240--Hb_004976_040 Hb_000866_370 Hb_000866_370 Hb_000645_240--Hb_000866_370 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340 Hb_000321_090 Hb_000321_090 Hb_001322_180--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_001322_180--Hb_000049_250 Hb_006829_100 Hb_006829_100 Hb_001322_180--Hb_006829_100 Hb_000834_230 Hb_000834_230 Hb_001322_180--Hb_000834_230 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_002027_190 Hb_002027_190 Hb_001322_180--Hb_002027_190 Hb_012325_010 Hb_012325_010 Hb_000227_330--Hb_012325_010 Hb_053575_020 Hb_053575_020 Hb_000227_330--Hb_053575_020 Hb_000125_180 Hb_000125_180 Hb_000227_330--Hb_000125_180 Hb_000317_350 Hb_000317_350 Hb_000227_330--Hb_000317_350 Hb_000205_250 Hb_000205_250 Hb_000227_330--Hb_000205_250 Hb_000271_120 Hb_000271_120 Hb_000227_330--Hb_000271_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81212 15.0165 3.51281 5.28227 3.69096 2.41199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.95059 2.88613 1.3588 16.9625 8.37525

CAGE analysis