Hb_008246_020

Information

Type -
Description -
Location Contig8246: 10379-12142
Sequence    

Annotation

kegg
ID rcu:RCOM_1451410
description amidophosphoribosyltransferase, putative (EC:2.4.2.14)
nr
ID XP_002513012.1
description amidophosphoribosyltransferase, putative [Ricinus communis]
swissprot
ID Q9STG9
description Amidophosphoribosyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=ASE2 PE=1 SV=1
trembl
ID B9RG60
description Amidophosphoribosyltransferase, putative OS=Ricinus communis GN=RCOM_1451410 PE=3 SV=1
Gene Ontology
ID GO:0004044
description gln phosphoribosyl pyrophosphate amidotransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008246_020 0.0 - - amidophosphoribosyltransferase, putative [Ricinus communis]
2 Hb_001105_160 0.110927151 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
3 Hb_005550_010 0.1150394266 - - PREDICTED: 3-ketoacyl-CoA synthase 4-like [Jatropha curcas]
4 Hb_000792_040 0.1179047829 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
5 Hb_019280_010 0.1235233427 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
6 Hb_006441_020 0.1270580328 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
7 Hb_001157_200 0.1273524288 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
8 Hb_006910_060 0.1284307268 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
9 Hb_006573_210 0.1316325648 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
10 Hb_010809_010 0.1319133508 - - Na+/H+ antiporter [Populus euphratica]
11 Hb_007747_080 0.1322394992 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000237_050 0.1328135424 - - CP2 [Hevea brasiliensis]
13 Hb_071130_010 0.1337068357 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
14 Hb_000836_550 0.1341285295 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
15 Hb_008221_170 0.1341448184 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]
16 Hb_032808_030 0.1341904882 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_002153_030 0.1345923502 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
18 Hb_013057_020 0.1352508691 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
19 Hb_002307_280 0.135888404 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
20 Hb_185830_070 0.1359845637 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008246_020 Hb_008246_020 Hb_001105_160 Hb_001105_160 Hb_008246_020--Hb_001105_160 Hb_005550_010 Hb_005550_010 Hb_008246_020--Hb_005550_010 Hb_000792_040 Hb_000792_040 Hb_008246_020--Hb_000792_040 Hb_019280_010 Hb_019280_010 Hb_008246_020--Hb_019280_010 Hb_006441_020 Hb_006441_020 Hb_008246_020--Hb_006441_020 Hb_001157_200 Hb_001157_200 Hb_008246_020--Hb_001157_200 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_041327_010 Hb_041327_010 Hb_001105_160--Hb_041327_010 Hb_005568_040 Hb_005568_040 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_010809_010 Hb_010809_010 Hb_001105_160--Hb_010809_010 Hb_011512_130 Hb_011512_130 Hb_005550_010--Hb_011512_130 Hb_000120_230 Hb_000120_230 Hb_005550_010--Hb_000120_230 Hb_005550_010--Hb_000792_040 Hb_111051_010 Hb_111051_010 Hb_005550_010--Hb_111051_010 Hb_002631_200 Hb_002631_200 Hb_005550_010--Hb_002631_200 Hb_000302_200 Hb_000302_200 Hb_000792_040--Hb_000302_200 Hb_185830_070 Hb_185830_070 Hb_000792_040--Hb_185830_070 Hb_004450_070 Hb_004450_070 Hb_000792_040--Hb_004450_070 Hb_007576_200 Hb_007576_200 Hb_000792_040--Hb_007576_200 Hb_006501_160 Hb_006501_160 Hb_000792_040--Hb_006501_160 Hb_019280_010--Hb_004450_070 Hb_103684_010 Hb_103684_010 Hb_019280_010--Hb_103684_010 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_000237_050 Hb_000237_050 Hb_019280_010--Hb_000237_050 Hb_004677_050 Hb_004677_050 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450 Hb_013057_020 Hb_013057_020 Hb_006441_020--Hb_013057_020 Hb_006922_050 Hb_006922_050 Hb_006441_020--Hb_006922_050 Hb_005188_030 Hb_005188_030 Hb_006441_020--Hb_005188_030 Hb_002307_270 Hb_002307_270 Hb_006441_020--Hb_002307_270 Hb_017387_010 Hb_017387_010 Hb_006441_020--Hb_017387_010 Hb_002915_060 Hb_002915_060 Hb_006441_020--Hb_002915_060 Hb_132880_040 Hb_132880_040 Hb_001157_200--Hb_132880_040 Hb_003544_030 Hb_003544_030 Hb_001157_200--Hb_003544_030 Hb_007747_080 Hb_007747_080 Hb_001157_200--Hb_007747_080 Hb_000984_170 Hb_000984_170 Hb_001157_200--Hb_000984_170 Hb_006452_120 Hb_006452_120 Hb_001157_200--Hb_006452_120 Hb_005663_110 Hb_005663_110 Hb_001157_200--Hb_005663_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.79137 24.5065 2.9575 24.0927 6.36634 12.7323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.29685 8.74443 10.6156 23.3585 12.5147

CAGE analysis