Hb_005550_010

Information

Type -
Description -
Location Contig5550: 11502-13049
Sequence    

Annotation

kegg
ID pop:POPTR_0004s16290g
description POPTRDRAFT_800773; hypothetical protein
nr
ID XP_012070145.1
description PREDICTED: 3-ketoacyl-CoA synthase 4-like [Jatropha curcas]
swissprot
ID Q9LN49
description 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1
trembl
ID A0A067LP60
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_10099 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005550_010 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 4-like [Jatropha curcas]
2 Hb_008246_020 0.1150394266 - - amidophosphoribosyltransferase, putative [Ricinus communis]
3 Hb_011512_130 0.1151718924 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
4 Hb_000120_230 0.1282645749 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
5 Hb_000792_040 0.1334401882 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
6 Hb_111051_010 0.1347159261 - - Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_002631_200 0.141596963 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
8 Hb_001157_200 0.143932199 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
9 Hb_002153_030 0.1458354876 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
10 Hb_011287_010 0.146588723 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_001642_070 0.1468728333 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
12 Hb_009193_100 0.1496632449 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
13 Hb_028872_110 0.1499317076 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
14 Hb_185830_070 0.1505246737 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
15 Hb_000997_180 0.1518198629 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005914_140 0.1521114149 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
17 Hb_002217_220 0.1546920577 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
18 Hb_001170_030 0.1547579934 - - synaptonemal complex protein, putative [Ricinus communis]
19 Hb_007904_130 0.1575352494 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
20 Hb_000625_090 0.1584932351 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005550_010 Hb_005550_010 Hb_008246_020 Hb_008246_020 Hb_005550_010--Hb_008246_020 Hb_011512_130 Hb_011512_130 Hb_005550_010--Hb_011512_130 Hb_000120_230 Hb_000120_230 Hb_005550_010--Hb_000120_230 Hb_000792_040 Hb_000792_040 Hb_005550_010--Hb_000792_040 Hb_111051_010 Hb_111051_010 Hb_005550_010--Hb_111051_010 Hb_002631_200 Hb_002631_200 Hb_005550_010--Hb_002631_200 Hb_001105_160 Hb_001105_160 Hb_008246_020--Hb_001105_160 Hb_008246_020--Hb_000792_040 Hb_019280_010 Hb_019280_010 Hb_008246_020--Hb_019280_010 Hb_006441_020 Hb_006441_020 Hb_008246_020--Hb_006441_020 Hb_001157_200 Hb_001157_200 Hb_008246_020--Hb_001157_200 Hb_008066_070 Hb_008066_070 Hb_011512_130--Hb_008066_070 Hb_011512_130--Hb_002631_200 Hb_002217_220 Hb_002217_220 Hb_011512_130--Hb_002217_220 Hb_005433_060 Hb_005433_060 Hb_011512_130--Hb_005433_060 Hb_008221_170 Hb_008221_170 Hb_011512_130--Hb_008221_170 Hb_011287_010 Hb_011287_010 Hb_000120_230--Hb_011287_010 Hb_029510_100 Hb_029510_100 Hb_000120_230--Hb_029510_100 Hb_008468_030 Hb_008468_030 Hb_000120_230--Hb_008468_030 Hb_006683_020 Hb_006683_020 Hb_000120_230--Hb_006683_020 Hb_005914_140 Hb_005914_140 Hb_000120_230--Hb_005914_140 Hb_005970_010 Hb_005970_010 Hb_000120_230--Hb_005970_010 Hb_000302_200 Hb_000302_200 Hb_000792_040--Hb_000302_200 Hb_185830_070 Hb_185830_070 Hb_000792_040--Hb_185830_070 Hb_004450_070 Hb_004450_070 Hb_000792_040--Hb_004450_070 Hb_007576_200 Hb_007576_200 Hb_000792_040--Hb_007576_200 Hb_006501_160 Hb_006501_160 Hb_000792_040--Hb_006501_160 Hb_111051_010--Hb_000120_230 Hb_111051_010--Hb_008468_030 Hb_041201_010 Hb_041201_010 Hb_111051_010--Hb_041201_010 Hb_111051_010--Hb_006441_020 Hb_013057_020 Hb_013057_020 Hb_111051_010--Hb_013057_020 Hb_000083_270 Hb_000083_270 Hb_002631_200--Hb_000083_270 Hb_002153_030 Hb_002153_030 Hb_002631_200--Hb_002153_030 Hb_000009_120 Hb_000009_120 Hb_002631_200--Hb_000009_120 Hb_000571_160 Hb_000571_160 Hb_002631_200--Hb_000571_160 Hb_011861_080 Hb_011861_080 Hb_002631_200--Hb_011861_080 Hb_002631_200--Hb_185830_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47142 11.4266 1.1557 12.0289 3.18168 3.29947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69863 3.03311 7.08711 15.4298 5.55943

CAGE analysis