Hb_002153_030

Information

Type -
Description -
Location Contig2153: 13196-20209
Sequence    

Annotation

kegg
ID tcc:TCM_030368
description E3 ubiquitin-protein ligase UPL5
nr
ID XP_007026270.1
description E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A067KXM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24891 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22260: 13155-13443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002153_030 0.0 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
2 Hb_002631_200 0.0962096227 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
3 Hb_007904_130 0.0971055173 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_002391_210 0.1047151336 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
5 Hb_001170_030 0.1089513655 - - synaptonemal complex protein, putative [Ricinus communis]
6 Hb_000402_190 0.1091640015 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
7 Hb_005081_020 0.1121110251 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
8 Hb_000009_120 0.1128310299 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
9 Hb_007747_080 0.1161378064 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000792_040 0.1183421327 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
11 Hb_000661_260 0.1199399027 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
12 Hb_002889_020 0.121756518 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
13 Hb_001642_070 0.1237575497 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
14 Hb_001105_160 0.1243271464 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
15 Hb_185830_070 0.1244442534 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
16 Hb_049436_010 0.125311377 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
17 Hb_000083_270 0.1256429146 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
18 Hb_000340_490 0.1280090657 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
19 Hb_000209_100 0.1298061447 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
20 Hb_083799_010 0.1308824257 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002153_030 Hb_002153_030 Hb_002631_200 Hb_002631_200 Hb_002153_030--Hb_002631_200 Hb_007904_130 Hb_007904_130 Hb_002153_030--Hb_007904_130 Hb_002391_210 Hb_002391_210 Hb_002153_030--Hb_002391_210 Hb_001170_030 Hb_001170_030 Hb_002153_030--Hb_001170_030 Hb_000402_190 Hb_000402_190 Hb_002153_030--Hb_000402_190 Hb_005081_020 Hb_005081_020 Hb_002153_030--Hb_005081_020 Hb_000083_270 Hb_000083_270 Hb_002631_200--Hb_000083_270 Hb_000009_120 Hb_000009_120 Hb_002631_200--Hb_000009_120 Hb_000571_160 Hb_000571_160 Hb_002631_200--Hb_000571_160 Hb_011861_080 Hb_011861_080 Hb_002631_200--Hb_011861_080 Hb_185830_070 Hb_185830_070 Hb_002631_200--Hb_185830_070 Hb_007904_130--Hb_000402_190 Hb_010863_010 Hb_010863_010 Hb_007904_130--Hb_010863_010 Hb_001642_070 Hb_001642_070 Hb_007904_130--Hb_001642_070 Hb_003544_030 Hb_003544_030 Hb_007904_130--Hb_003544_030 Hb_007904_130--Hb_001170_030 Hb_172632_110 Hb_172632_110 Hb_002391_210--Hb_172632_110 Hb_002400_410 Hb_002400_410 Hb_002391_210--Hb_002400_410 Hb_001761_130 Hb_001761_130 Hb_002391_210--Hb_001761_130 Hb_007747_080 Hb_007747_080 Hb_002391_210--Hb_007747_080 Hb_001021_080 Hb_001021_080 Hb_002391_210--Hb_001021_080 Hb_002391_210--Hb_005081_020 Hb_001170_030--Hb_001642_070 Hb_002908_050 Hb_002908_050 Hb_001170_030--Hb_002908_050 Hb_001170_030--Hb_010863_010 Hb_000025_790 Hb_000025_790 Hb_001170_030--Hb_000025_790 Hb_000614_240 Hb_000614_240 Hb_001170_030--Hb_000614_240 Hb_000402_190--Hb_002391_210 Hb_003544_060 Hb_003544_060 Hb_000402_190--Hb_003544_060 Hb_002344_060 Hb_002344_060 Hb_000402_190--Hb_002344_060 Hb_000107_660 Hb_000107_660 Hb_000402_190--Hb_000107_660 Hb_010222_070 Hb_010222_070 Hb_000402_190--Hb_010222_070 Hb_083799_010 Hb_083799_010 Hb_005081_020--Hb_083799_010 Hb_000692_160 Hb_000692_160 Hb_005081_020--Hb_000692_160 Hb_075315_010 Hb_075315_010 Hb_005081_020--Hb_075315_010 Hb_001269_140 Hb_001269_140 Hb_005081_020--Hb_001269_140 Hb_003906_170 Hb_003906_170 Hb_005081_020--Hb_003906_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34728 3.05392 0.821709 1.77474 0.525052 1.25833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1701 0.770341 1.60107 3.76929 1.42727

CAGE analysis