Hb_007904_130

Information

Type -
Description -
Location Contig7904: 69930-74295
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01170g
description POPTRDRAFT_1100674; hypothetical protein
nr
ID XP_012085556.1
description PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067JVB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17876 PE=4 SV=1
Gene Ontology
ID GO:0016874
description ultraviolet-b receptor uvr8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58321: 69679-70063 , PASA_asmbl_58322: 70664-71728 , PASA_asmbl_58323: 71854-72630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_130 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
2 Hb_000402_190 0.0721611765 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
3 Hb_010863_010 0.0883679076 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
4 Hb_001642_070 0.0909320872 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
5 Hb_003544_030 0.096222517 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
6 Hb_002153_030 0.0971055173 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
7 Hb_001170_030 0.1006572166 - - synaptonemal complex protein, putative [Ricinus communis]
8 Hb_011883_020 0.1024143643 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_007747_080 0.1028337908 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001500_100 0.1031738486 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002391_210 0.1034348163 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
12 Hb_011016_050 0.1037891717 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
13 Hb_000327_250 0.1057920317 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
14 Hb_006006_040 0.1060687696 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
15 Hb_003544_060 0.1060807863 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
16 Hb_002889_020 0.1066633995 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
17 Hb_002631_200 0.1069849736 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
18 Hb_000614_240 0.1073620252 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
19 Hb_005074_020 0.110727307 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
20 Hb_000209_100 0.1117148351 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_130 Hb_007904_130 Hb_000402_190 Hb_000402_190 Hb_007904_130--Hb_000402_190 Hb_010863_010 Hb_010863_010 Hb_007904_130--Hb_010863_010 Hb_001642_070 Hb_001642_070 Hb_007904_130--Hb_001642_070 Hb_003544_030 Hb_003544_030 Hb_007904_130--Hb_003544_030 Hb_002153_030 Hb_002153_030 Hb_007904_130--Hb_002153_030 Hb_001170_030 Hb_001170_030 Hb_007904_130--Hb_001170_030 Hb_002391_210 Hb_002391_210 Hb_000402_190--Hb_002391_210 Hb_003544_060 Hb_003544_060 Hb_000402_190--Hb_003544_060 Hb_002344_060 Hb_002344_060 Hb_000402_190--Hb_002344_060 Hb_000107_660 Hb_000107_660 Hb_000402_190--Hb_000107_660 Hb_010222_070 Hb_010222_070 Hb_000402_190--Hb_010222_070 Hb_000614_240 Hb_000614_240 Hb_010863_010--Hb_000614_240 Hb_000120_080 Hb_000120_080 Hb_010863_010--Hb_000120_080 Hb_004787_050 Hb_004787_050 Hb_010863_010--Hb_004787_050 Hb_005634_010 Hb_005634_010 Hb_010863_010--Hb_005634_010 Hb_002471_090 Hb_002471_090 Hb_010863_010--Hb_002471_090 Hb_002456_010 Hb_002456_010 Hb_010863_010--Hb_002456_010 Hb_004450_070 Hb_004450_070 Hb_001642_070--Hb_004450_070 Hb_016347_010 Hb_016347_010 Hb_001642_070--Hb_016347_010 Hb_000327_250 Hb_000327_250 Hb_001642_070--Hb_000327_250 Hb_019280_010 Hb_019280_010 Hb_001642_070--Hb_019280_010 Hb_000363_040 Hb_000363_040 Hb_001642_070--Hb_000363_040 Hb_000209_100 Hb_000209_100 Hb_001642_070--Hb_000209_100 Hb_003544_030--Hb_000327_250 Hb_005663_110 Hb_005663_110 Hb_003544_030--Hb_005663_110 Hb_001434_080 Hb_001434_080 Hb_003544_030--Hb_001434_080 Hb_003544_030--Hb_016347_010 Hb_006452_120 Hb_006452_120 Hb_003544_030--Hb_006452_120 Hb_017387_010 Hb_017387_010 Hb_003544_030--Hb_017387_010 Hb_002631_200 Hb_002631_200 Hb_002153_030--Hb_002631_200 Hb_002153_030--Hb_002391_210 Hb_002153_030--Hb_001170_030 Hb_002153_030--Hb_000402_190 Hb_005081_020 Hb_005081_020 Hb_002153_030--Hb_005081_020 Hb_001170_030--Hb_001642_070 Hb_002908_050 Hb_002908_050 Hb_001170_030--Hb_002908_050 Hb_001170_030--Hb_010863_010 Hb_000025_790 Hb_000025_790 Hb_001170_030--Hb_000025_790 Hb_001170_030--Hb_000614_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1416 33.7078 18.3459 29.7451 12.1375 14.4397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9434 12.3725 31.033 47.4357 18.4052

CAGE analysis