Hb_000402_190

Information

Type -
Description -
Location Contig402: 184605-188819
Sequence    

Annotation

kegg
ID rcu:RCOM_0024680
description hypothetical protein
nr
ID XP_012085472.1
description PREDICTED: F-box protein At1g70590 [Jatropha curcas]
swissprot
ID Q94C27
description F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1
trembl
ID A0A067JUZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17806 PE=4 SV=1
Gene Ontology
ID GO:0005622
description f-box protein at1g70590 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39934: 185176-187143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_190 0.0 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
2 Hb_007904_130 0.0721611765 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_002391_210 0.0919914085 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
4 Hb_003544_060 0.0951724973 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
5 Hb_002344_060 0.0988564843 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
6 Hb_000107_660 0.0988906646 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
7 Hb_010222_070 0.1010236408 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
8 Hb_007747_080 0.101409524 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002456_010 0.1034337891 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
10 Hb_000739_100 0.1035069192 - - ku P80 DNA helicase, putative [Ricinus communis]
11 Hb_002900_090 0.1036954571 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
12 Hb_002889_020 0.1046847687 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
13 Hb_000152_660 0.1058357235 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
14 Hb_001269_140 0.1058680408 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
15 Hb_111889_010 0.105968188 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
16 Hb_002234_090 0.106098725 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
17 Hb_000024_040 0.1063586518 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
18 Hb_003768_050 0.1086205656 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
19 Hb_001878_050 0.1086280468 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
20 Hb_002153_030 0.1091640015 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]

Gene co-expression network

sample Hb_000402_190 Hb_000402_190 Hb_007904_130 Hb_007904_130 Hb_000402_190--Hb_007904_130 Hb_002391_210 Hb_002391_210 Hb_000402_190--Hb_002391_210 Hb_003544_060 Hb_003544_060 Hb_000402_190--Hb_003544_060 Hb_002344_060 Hb_002344_060 Hb_000402_190--Hb_002344_060 Hb_000107_660 Hb_000107_660 Hb_000402_190--Hb_000107_660 Hb_010222_070 Hb_010222_070 Hb_000402_190--Hb_010222_070 Hb_010863_010 Hb_010863_010 Hb_007904_130--Hb_010863_010 Hb_001642_070 Hb_001642_070 Hb_007904_130--Hb_001642_070 Hb_003544_030 Hb_003544_030 Hb_007904_130--Hb_003544_030 Hb_002153_030 Hb_002153_030 Hb_007904_130--Hb_002153_030 Hb_001170_030 Hb_001170_030 Hb_007904_130--Hb_001170_030 Hb_172632_110 Hb_172632_110 Hb_002391_210--Hb_172632_110 Hb_002400_410 Hb_002400_410 Hb_002391_210--Hb_002400_410 Hb_001761_130 Hb_001761_130 Hb_002391_210--Hb_001761_130 Hb_007747_080 Hb_007747_080 Hb_002391_210--Hb_007747_080 Hb_001021_080 Hb_001021_080 Hb_002391_210--Hb_001021_080 Hb_005081_020 Hb_005081_020 Hb_002391_210--Hb_005081_020 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_011618_090 Hb_011618_090 Hb_003544_060--Hb_011618_090 Hb_000152_660 Hb_000152_660 Hb_002344_060--Hb_000152_660 Hb_001878_050 Hb_001878_050 Hb_002344_060--Hb_001878_050 Hb_002344_060--Hb_007747_080 Hb_000441_150 Hb_000441_150 Hb_002344_060--Hb_000441_150 Hb_015175_050 Hb_015175_050 Hb_002344_060--Hb_015175_050 Hb_011716_070 Hb_011716_070 Hb_002344_060--Hb_011716_070 Hb_003835_070 Hb_003835_070 Hb_000107_660--Hb_003835_070 Hb_000107_660--Hb_003544_060 Hb_000012_260 Hb_000012_260 Hb_000107_660--Hb_000012_260 Hb_000107_660--Hb_002456_010 Hb_105105_010 Hb_105105_010 Hb_000107_660--Hb_105105_010 Hb_002217_170 Hb_002217_170 Hb_000107_660--Hb_002217_170 Hb_003768_050 Hb_003768_050 Hb_010222_070--Hb_003768_050 Hb_000024_040 Hb_000024_040 Hb_010222_070--Hb_000024_040 Hb_001217_050 Hb_001217_050 Hb_010222_070--Hb_001217_050 Hb_002007_160 Hb_002007_160 Hb_010222_070--Hb_002007_160 Hb_000347_390 Hb_000347_390 Hb_010222_070--Hb_000347_390 Hb_010222_070--Hb_002234_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.62314 14.7712 7.38525 8.95169 5.47267 7.07656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.77119 4.67013 10.2858 16.275 5.39671

CAGE analysis