Hb_000441_150

Information

Type -
Description -
Location Contig441: 194564-199173
Sequence    

Annotation

kegg
ID rcu:RCOM_1338000
description ferredoxin--NADP reductase, putative (EC:1.18.1.2)
nr
ID XP_012075620.1
description PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q41014
description Ferredoxin--NADP reductase, root isozyme, chloroplastic OS=Pisum sativum PE=2 SV=2
trembl
ID B9SB31
description Ferredoxin--NADP reductase OS=Ricinus communis GN=RCOM_1338000 PE=3 SV=1
Gene Ontology
ID GO:0004324
description ferredoxin--nadp root chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42636: 194706-198517 , PASA_asmbl_42637: 198634-199035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_150 0.0 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_002344_060 0.0893417253 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
3 Hb_000221_250 0.0906579794 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
4 Hb_015175_050 0.1005763695 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
5 Hb_010417_080 0.1014004764 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
6 Hb_000152_660 0.1043493047 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
7 Hb_002667_060 0.1075196823 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
8 Hb_006788_020 0.1078421628 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
9 Hb_166236_010 0.1082927069 - - -
10 Hb_000140_480 0.1087930211 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
11 Hb_011716_070 0.1090869975 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
12 Hb_000116_410 0.1098401015 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
13 Hb_003494_200 0.1168479934 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
14 Hb_005000_260 0.1176295581 - - recA family protein [Populus trichocarpa]
15 Hb_000856_310 0.1179655595 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
16 Hb_001018_050 0.1190909774 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
17 Hb_002255_030 0.1200049472 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
18 Hb_165928_030 0.1203774166 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001635_090 0.1205515262 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
20 Hb_012114_080 0.1209226885 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000441_150 Hb_000441_150 Hb_002344_060 Hb_002344_060 Hb_000441_150--Hb_002344_060 Hb_000221_250 Hb_000221_250 Hb_000441_150--Hb_000221_250 Hb_015175_050 Hb_015175_050 Hb_000441_150--Hb_015175_050 Hb_010417_080 Hb_010417_080 Hb_000441_150--Hb_010417_080 Hb_000152_660 Hb_000152_660 Hb_000441_150--Hb_000152_660 Hb_002667_060 Hb_002667_060 Hb_000441_150--Hb_002667_060 Hb_002344_060--Hb_000152_660 Hb_001878_050 Hb_001878_050 Hb_002344_060--Hb_001878_050 Hb_007747_080 Hb_007747_080 Hb_002344_060--Hb_007747_080 Hb_002344_060--Hb_015175_050 Hb_011716_070 Hb_011716_070 Hb_002344_060--Hb_011716_070 Hb_000020_150 Hb_000020_150 Hb_000221_250--Hb_000020_150 Hb_003097_170 Hb_003097_170 Hb_000221_250--Hb_003097_170 Hb_000221_250--Hb_011716_070 Hb_001860_030 Hb_001860_030 Hb_000221_250--Hb_001860_030 Hb_004046_050 Hb_004046_050 Hb_000221_250--Hb_004046_050 Hb_007123_030 Hb_007123_030 Hb_000221_250--Hb_007123_030 Hb_015175_050--Hb_011716_070 Hb_015175_050--Hb_000221_250 Hb_015175_050--Hb_001878_050 Hb_015175_050--Hb_000152_660 Hb_004577_020 Hb_004577_020 Hb_010417_080--Hb_004577_020 Hb_001221_100 Hb_001221_100 Hb_010417_080--Hb_001221_100 Hb_005064_060 Hb_005064_060 Hb_010417_080--Hb_005064_060 Hb_010417_080--Hb_004046_050 Hb_011218_040 Hb_011218_040 Hb_010417_080--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_010417_080--Hb_039946_020 Hb_001018_050 Hb_001018_050 Hb_000152_660--Hb_001018_050 Hb_000140_480 Hb_000140_480 Hb_000152_660--Hb_000140_480 Hb_001157_090 Hb_001157_090 Hb_000152_660--Hb_001157_090 Hb_000739_100 Hb_000739_100 Hb_000152_660--Hb_000739_100 Hb_002391_210 Hb_002391_210 Hb_000152_660--Hb_002391_210 Hb_010142_030 Hb_010142_030 Hb_002667_060--Hb_010142_030 Hb_000862_030 Hb_000862_030 Hb_002667_060--Hb_000862_030 Hb_001314_010 Hb_001314_010 Hb_002667_060--Hb_001314_010 Hb_001492_020 Hb_001492_020 Hb_002667_060--Hb_001492_020 Hb_003693_070 Hb_003693_070 Hb_002667_060--Hb_003693_070 Hb_000421_210 Hb_000421_210 Hb_002667_060--Hb_000421_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6627 16.3627 7.95894 11.3739 8.53492 15.6707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0438 10.8368 7.8368 24.0047 5.6901

CAGE analysis