Hb_000421_210

Information

Type -
Description -
Location Contig421: 149786-155182
Sequence    

Annotation

kegg
ID rcu:RCOM_1398810
description hypothetical protein
nr
ID XP_002526335.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M1E7
description Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1
trembl
ID B9SK16
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1398810 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41619: 150143-155200
cDNA
(Sanger)
(ID:Location)		 011_G17.ab1: 150161-150620

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000003_480 0.0949368045 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
3 Hb_001279_140 0.1022853475 - - PREDICTED: cystinosin homolog [Jatropha curcas]
4 Hb_002667_060 0.1056015889 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
5 Hb_000260_220 0.1127780047 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_000031_220 0.1161354886 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
7 Hb_000640_120 0.1242690175 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
8 Hb_001840_070 0.1310743489 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000331_210 0.132331472 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
10 Hb_001663_030 0.1343395001 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
11 Hb_001472_120 0.1345312837 - - -
12 Hb_062007_010 0.1355396316 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
13 Hb_002054_040 0.1365097521 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
14 Hb_000580_190 0.1365795625 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
15 Hb_001314_010 0.1384328734 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
16 Hb_010142_030 0.1385026595 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_004837_130 0.1394633423 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
18 Hb_002982_040 0.1399364265 - - mta/sah nucleosidase, putative [Ricinus communis]
19 Hb_002027_270 0.1413348549 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
20 Hb_000252_200 0.1423232198 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000421_210 Hb_000421_210 Hb_000003_480 Hb_000003_480 Hb_000421_210--Hb_000003_480 Hb_001279_140 Hb_001279_140 Hb_000421_210--Hb_001279_140 Hb_002667_060 Hb_002667_060 Hb_000421_210--Hb_002667_060 Hb_000260_220 Hb_000260_220 Hb_000421_210--Hb_000260_220 Hb_000031_220 Hb_000031_220 Hb_000421_210--Hb_000031_220 Hb_000640_120 Hb_000640_120 Hb_000421_210--Hb_000640_120 Hb_000003_480--Hb_000031_220 Hb_000003_480--Hb_000260_220 Hb_005054_290 Hb_005054_290 Hb_000003_480--Hb_005054_290 Hb_003847_080 Hb_003847_080 Hb_000003_480--Hb_003847_080 Hb_002982_040 Hb_002982_040 Hb_000003_480--Hb_002982_040 Hb_106724_020 Hb_106724_020 Hb_000003_480--Hb_106724_020 Hb_001472_120 Hb_001472_120 Hb_001279_140--Hb_001472_120 Hb_001279_140--Hb_000003_480 Hb_000057_200 Hb_000057_200 Hb_001279_140--Hb_000057_200 Hb_001279_140--Hb_000260_220 Hb_000395_080 Hb_000395_080 Hb_001279_140--Hb_000395_080 Hb_010142_030 Hb_010142_030 Hb_002667_060--Hb_010142_030 Hb_000862_030 Hb_000862_030 Hb_002667_060--Hb_000862_030 Hb_001314_010 Hb_001314_010 Hb_002667_060--Hb_001314_010 Hb_001492_020 Hb_001492_020 Hb_002667_060--Hb_001492_020 Hb_003693_070 Hb_003693_070 Hb_002667_060--Hb_003693_070 Hb_000260_220--Hb_000031_220 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_002054_040 Hb_002054_040 Hb_000260_220--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010 Hb_000031_220--Hb_002982_040 Hb_002027_270 Hb_002027_270 Hb_000031_220--Hb_002027_270 Hb_000031_220--Hb_002054_040 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_000640_120--Hb_001492_020 Hb_002235_170 Hb_002235_170 Hb_000640_120--Hb_002235_170 Hb_000205_100 Hb_000205_100 Hb_000640_120--Hb_000205_100 Hb_000640_120--Hb_001314_010 Hb_002662_020 Hb_002662_020 Hb_000640_120--Hb_002662_020 Hb_100215_010 Hb_100215_010 Hb_000640_120--Hb_100215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.2721 42.5932 5.3917 52.7307 34.1887 96.5061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.4516 29.8154 50.5679 72.922 18.8547

CAGE analysis