Hb_016657_010

Information

Type -
Description -
Location Contig16657: 13290-21066
Sequence    

Annotation

kegg
ID rcu:RCOM_0364320
description peroxisomal targeting signal type 1 (pts1) receptor, putative
nr
ID XP_012081868.1
description PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
swissprot
ID Q9FMA3
description Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1
trembl
ID A0A067KCF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19232 PE=4 SV=1
Gene Ontology
ID GO:0005622
description peroxisome biogenesis protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15369: 13359-42927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016657_010 0.0 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
2 Hb_000046_440 0.0753317607 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
3 Hb_000260_220 0.0803399073 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_007317_190 0.0890250306 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
5 Hb_000522_090 0.091038176 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
6 Hb_005977_090 0.0913611038 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
7 Hb_000556_020 0.0916092146 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
8 Hb_002784_060 0.0939260464 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
9 Hb_003728_030 0.0950608082 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
10 Hb_010931_080 0.0965204696 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
11 Hb_000568_040 0.096571638 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
12 Hb_002374_050 0.0980230938 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
13 Hb_006114_030 0.0985352559 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
14 Hb_004108_140 0.0990969491 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
15 Hb_000429_120 0.0992992911 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
16 Hb_028487_110 0.0993436185 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
17 Hb_026099_010 0.0995541271 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
18 Hb_002067_150 0.0997498554 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
19 Hb_003673_060 0.1007753145 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
20 Hb_000316_030 0.1018145158 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_016657_010 Hb_016657_010 Hb_000046_440 Hb_000046_440 Hb_016657_010--Hb_000046_440 Hb_000260_220 Hb_000260_220 Hb_016657_010--Hb_000260_220 Hb_007317_190 Hb_007317_190 Hb_016657_010--Hb_007317_190 Hb_000522_090 Hb_000522_090 Hb_016657_010--Hb_000522_090 Hb_005977_090 Hb_005977_090 Hb_016657_010--Hb_005977_090 Hb_000556_020 Hb_000556_020 Hb_016657_010--Hb_000556_020 Hb_026099_010 Hb_026099_010 Hb_000046_440--Hb_026099_010 Hb_021409_170 Hb_021409_170 Hb_000046_440--Hb_021409_170 Hb_000789_080 Hb_000789_080 Hb_000046_440--Hb_000789_080 Hb_000429_120 Hb_000429_120 Hb_000046_440--Hb_000429_120 Hb_001221_040 Hb_001221_040 Hb_000046_440--Hb_001221_040 Hb_000567_050 Hb_000567_050 Hb_000046_440--Hb_000567_050 Hb_000031_220 Hb_000031_220 Hb_000260_220--Hb_000031_220 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_002054_040 Hb_002054_040 Hb_000260_220--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_000568_040 Hb_000568_040 Hb_007317_190--Hb_000568_040 Hb_006913_040 Hb_006913_040 Hb_007317_190--Hb_006913_040 Hb_004108_140 Hb_004108_140 Hb_007317_190--Hb_004108_140 Hb_002232_170 Hb_002232_170 Hb_007317_190--Hb_002232_170 Hb_007317_190--Hb_000522_090 Hb_000803_300 Hb_000803_300 Hb_000522_090--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_000522_090--Hb_002097_090 Hb_005245_130 Hb_005245_130 Hb_000522_090--Hb_005245_130 Hb_004934_090 Hb_004934_090 Hb_000522_090--Hb_004934_090 Hb_000522_090--Hb_005977_090 Hb_002030_030 Hb_002030_030 Hb_000522_090--Hb_002030_030 Hb_028487_110 Hb_028487_110 Hb_005977_090--Hb_028487_110 Hb_001638_250 Hb_001638_250 Hb_005977_090--Hb_001638_250 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_007586_030 Hb_007586_030 Hb_005977_090--Hb_007586_030 Hb_005977_090--Hb_000803_300 Hb_003728_030 Hb_003728_030 Hb_000556_020--Hb_003728_030 Hb_000483_360 Hb_000483_360 Hb_000556_020--Hb_000483_360 Hb_001811_150 Hb_001811_150 Hb_000556_020--Hb_001811_150 Hb_000879_140 Hb_000879_140 Hb_000556_020--Hb_000879_140 Hb_000556_020--Hb_000522_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.0245 45.3004 17.1079 25.2682 80.625 119.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.472 27.1131 47.9077 49.6827 34.9596

CAGE analysis