Hb_001314_010

Information

Type -
Description -
Location Contig1314: 25666-29780
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10500g
description hypothetical protein
nr
ID XP_012076092.1
description PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
swissprot
ID B9FJG3
description Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica GN=Os05g0239150 PE=3 SV=1
trembl
ID A0A067KRK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11935 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger bed domain-containing protein ricesleeper 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09163: 25790-29255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001314_010 0.0 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
2 Hb_002235_170 0.0693814173 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
3 Hb_001492_020 0.0764635489 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
4 Hb_001617_060 0.0767053486 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
5 Hb_000083_160 0.0818585073 - - Cell division cycle protein, putative [Ricinus communis]
6 Hb_100215_010 0.0825007871 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
7 Hb_001635_090 0.082782895 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
8 Hb_004935_030 0.0828277216 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
9 Hb_002213_070 0.0843629555 - - epsilon-adaptin family protein [Populus trichocarpa]
10 Hb_143629_110 0.0859334637 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
11 Hb_000347_180 0.0868039153 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
12 Hb_000983_150 0.0871676973 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
13 Hb_000703_150 0.0879389061 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
14 Hb_000890_210 0.0894419494 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
15 Hb_000127_040 0.0900483283 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
16 Hb_000071_030 0.0907497166 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
17 Hb_000457_260 0.0914200568 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
18 Hb_004689_050 0.0915612497 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000640_120 0.0920277932 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
20 Hb_010142_030 0.0928676976 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001314_010 Hb_001314_010 Hb_002235_170 Hb_002235_170 Hb_001314_010--Hb_002235_170 Hb_001492_020 Hb_001492_020 Hb_001314_010--Hb_001492_020 Hb_001617_060 Hb_001617_060 Hb_001314_010--Hb_001617_060 Hb_000083_160 Hb_000083_160 Hb_001314_010--Hb_000083_160 Hb_100215_010 Hb_100215_010 Hb_001314_010--Hb_100215_010 Hb_001635_090 Hb_001635_090 Hb_001314_010--Hb_001635_090 Hb_002235_170--Hb_001492_020 Hb_105328_020 Hb_105328_020 Hb_002235_170--Hb_105328_020 Hb_000127_040 Hb_000127_040 Hb_002235_170--Hb_000127_040 Hb_000862_030 Hb_000862_030 Hb_002235_170--Hb_000862_030 Hb_002213_070 Hb_002213_070 Hb_002235_170--Hb_002213_070 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_007336_010 Hb_007336_010 Hb_001492_020--Hb_007336_010 Hb_000120_060 Hb_000120_060 Hb_001492_020--Hb_000120_060 Hb_000613_080 Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_000083_160--Hb_004935_030 Hb_031284_040 Hb_031284_040 Hb_000083_160--Hb_031284_040 Hb_000271_090 Hb_000271_090 Hb_000083_160--Hb_000271_090 Hb_000083_160--Hb_001617_060 Hb_000083_160--Hb_001635_090 Hb_000083_160--Hb_002235_170 Hb_000983_150 Hb_000983_150 Hb_100215_010--Hb_000983_150 Hb_000300_440 Hb_000300_440 Hb_100215_010--Hb_000300_440 Hb_004689_050 Hb_004689_050 Hb_100215_010--Hb_004689_050 Hb_100215_010--Hb_003362_070 Hb_000023_190 Hb_000023_190 Hb_100215_010--Hb_000023_190 Hb_000343_030 Hb_000343_030 Hb_100215_010--Hb_000343_030 Hb_001408_040 Hb_001408_040 Hb_001635_090--Hb_001408_040 Hb_000116_410 Hb_000116_410 Hb_001635_090--Hb_000116_410 Hb_001584_120 Hb_001584_120 Hb_001635_090--Hb_001584_120 Hb_007576_110 Hb_007576_110 Hb_001635_090--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_001635_090--Hb_000173_490 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0841 16.2748 9.76614 18.3519 14.046 28.3077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1299 8.85894 17.0383 22.3563 9.24883

CAGE analysis