Hb_002667_060

Information

Type -
Description -
Location Contig2667: 135082-140229
Sequence    

Annotation

kegg
ID rcu:RCOM_0852750
description mannose-1-phosphate guanyltransferase, putative (EC:2.7.7.13)
nr
ID XP_002517417.1
description mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
swissprot
ID Q86HG0
description Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1
trembl
ID B9RUH2
description Mannose-1-phosphate guanyltransferase, putative OS=Ricinus communis GN=RCOM_0852750 PE=4 SV=1
Gene Ontology
ID GO:0005777
description mannose-1-phosphate guanyltransferase alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27825: 134777-140221
cDNA
(Sanger)
(ID:Location)		 019_A22.ab1: 137833-140221 , 025_O19.ab1: 137432-140221 , 032_E18.ab1: 137409-140225 , 050_H23.ab1: 138670-140225

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002667_060 0.0 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
2 Hb_010142_030 0.0868845224 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000862_030 0.0930377637 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
4 Hb_001314_010 0.0964403737 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
5 Hb_001492_020 0.103452336 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
6 Hb_003693_070 0.1038633591 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
7 Hb_000421_210 0.1056015889 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002235_170 0.1068257663 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
9 Hb_000441_150 0.1075196823 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_003940_040 0.1076867548 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000640_120 0.1094808556 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
12 Hb_004143_040 0.1100901501 - - argininosuccinate lyase, putative [Ricinus communis]
13 Hb_000023_280 0.1104082153 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
14 Hb_000116_410 0.1117473834 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
15 Hb_000003_480 0.1137922921 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
16 Hb_062007_010 0.117433181 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
17 Hb_004689_050 0.1200281953 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005054_290 0.1204558837 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
19 Hb_002685_110 0.1212726691 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
20 Hb_073973_100 0.1217775877 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]

Gene co-expression network

sample Hb_002667_060 Hb_002667_060 Hb_010142_030 Hb_010142_030 Hb_002667_060--Hb_010142_030 Hb_000862_030 Hb_000862_030 Hb_002667_060--Hb_000862_030 Hb_001314_010 Hb_001314_010 Hb_002667_060--Hb_001314_010 Hb_001492_020 Hb_001492_020 Hb_002667_060--Hb_001492_020 Hb_003693_070 Hb_003693_070 Hb_002667_060--Hb_003693_070 Hb_000421_210 Hb_000421_210 Hb_002667_060--Hb_000421_210 Hb_010142_030--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_010142_030--Hb_000120_060 Hb_000023_280 Hb_000023_280 Hb_010142_030--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_010142_030--Hb_000116_410 Hb_003940_040 Hb_003940_040 Hb_010142_030--Hb_003940_040 Hb_001635_090 Hb_001635_090 Hb_010142_030--Hb_001635_090 Hb_004127_030 Hb_004127_030 Hb_000862_030--Hb_004127_030 Hb_002235_170 Hb_002235_170 Hb_000862_030--Hb_002235_170 Hb_000862_030--Hb_001492_020 Hb_002213_070 Hb_002213_070 Hb_000862_030--Hb_002213_070 Hb_004689_050 Hb_004689_050 Hb_000862_030--Hb_004689_050 Hb_002675_070 Hb_002675_070 Hb_000862_030--Hb_002675_070 Hb_001314_010--Hb_002235_170 Hb_001314_010--Hb_001492_020 Hb_001617_060 Hb_001617_060 Hb_001314_010--Hb_001617_060 Hb_000083_160 Hb_000083_160 Hb_001314_010--Hb_000083_160 Hb_100215_010 Hb_100215_010 Hb_001314_010--Hb_100215_010 Hb_001314_010--Hb_001635_090 Hb_001492_020--Hb_002235_170 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_007336_010 Hb_007336_010 Hb_001492_020--Hb_007336_010 Hb_001492_020--Hb_000120_060 Hb_003693_070--Hb_000120_060 Hb_000808_280 Hb_000808_280 Hb_003693_070--Hb_000808_280 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_000003_480 Hb_000003_480 Hb_000421_210--Hb_000003_480 Hb_001279_140 Hb_001279_140 Hb_000421_210--Hb_001279_140 Hb_000260_220 Hb_000260_220 Hb_000421_210--Hb_000260_220 Hb_000031_220 Hb_000031_220 Hb_000421_210--Hb_000031_220 Hb_000421_210--Hb_000640_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3795 9.70605 5.80993 13.2346 6.64534 19.0385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0059 7.12378 10.3992 17.6984 4.56153

CAGE analysis