Hb_003097_170

Information

Type -
Description -
Location Contig3097: 117832-118749
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06040g
description POPTRDRAFT_814836; hypothetical protein
nr
ID XP_012068603.1
description PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
swissprot
ID Q39096
description Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1
trembl
ID A0A067KZS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24492 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32743: 117540-118818 , PASA_asmbl_32744: 117857-118671
cDNA
(Sanger)
(ID:Location)		 028_F23.ab1: 117944-118671 , 028_K20.ab1: 117924-118671

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_170 0.0 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
2 Hb_004235_080 0.0660250117 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
3 Hb_000923_080 0.0720466957 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
4 Hb_000221_250 0.0801143239 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
5 Hb_000020_150 0.0865672872 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
6 Hb_004429_100 0.0871590218 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
7 Hb_001030_110 0.0877650499 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 isoform X1 [Jatropha curcas]
8 Hb_001235_140 0.0908182278 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
9 Hb_002784_020 0.0916765487 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
10 Hb_007632_190 0.094041711 - - PREDICTED: inactive beta-amylase 4, chloroplastic isoform X5 [Camelina sativa]
11 Hb_183612_040 0.0943232242 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
12 Hb_007123_030 0.0947717576 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
13 Hb_008159_020 0.095663828 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
14 Hb_000656_380 0.0959336876 - - PREDICTED: exportin-T [Jatropha curcas]
15 Hb_000015_060 0.1008294959 - - PREDICTED: uncharacterized protein LOC104239844 isoform X2 [Nicotiana sylvestris]
16 Hb_010053_030 0.1013055597 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
17 Hb_002375_010 0.1014133221 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
18 Hb_005289_040 0.1020177216 - - poly(A) polymerase, putative [Ricinus communis]
19 Hb_002876_130 0.1023883305 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
20 Hb_002374_010 0.102614776 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003097_170 Hb_003097_170 Hb_004235_080 Hb_004235_080 Hb_003097_170--Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_003097_170--Hb_000923_080 Hb_000221_250 Hb_000221_250 Hb_003097_170--Hb_000221_250 Hb_000020_150 Hb_000020_150 Hb_003097_170--Hb_000020_150 Hb_004429_100 Hb_004429_100 Hb_003097_170--Hb_004429_100 Hb_001030_110 Hb_001030_110 Hb_003097_170--Hb_001030_110 Hb_004235_080--Hb_000923_080 Hb_008159_020 Hb_008159_020 Hb_004235_080--Hb_008159_020 Hb_002375_010 Hb_002375_010 Hb_004235_080--Hb_002375_010 Hb_004209_020 Hb_004209_020 Hb_004235_080--Hb_004209_020 Hb_104061_020 Hb_104061_020 Hb_004235_080--Hb_104061_020 Hb_010053_030 Hb_010053_030 Hb_000923_080--Hb_010053_030 Hb_000648_100 Hb_000648_100 Hb_000923_080--Hb_000648_100 Hb_000923_080--Hb_004209_020 Hb_000923_080--Hb_008159_020 Hb_000923_080--Hb_104061_020 Hb_000221_250--Hb_000020_150 Hb_011716_070 Hb_011716_070 Hb_000221_250--Hb_011716_070 Hb_001860_030 Hb_001860_030 Hb_000221_250--Hb_001860_030 Hb_004046_050 Hb_004046_050 Hb_000221_250--Hb_004046_050 Hb_007123_030 Hb_007123_030 Hb_000221_250--Hb_007123_030 Hb_028872_090 Hb_028872_090 Hb_000020_150--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_000020_150--Hb_000120_430 Hb_063716_100 Hb_063716_100 Hb_000020_150--Hb_063716_100 Hb_033834_030 Hb_033834_030 Hb_000020_150--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_000020_150--Hb_183612_040 Hb_004689_050 Hb_004689_050 Hb_004429_100--Hb_004689_050 Hb_033834_060 Hb_033834_060 Hb_004429_100--Hb_033834_060 Hb_000271_090 Hb_000271_090 Hb_004429_100--Hb_000271_090 Hb_006157_020 Hb_006157_020 Hb_004429_100--Hb_006157_020 Hb_001172_010 Hb_001172_010 Hb_004429_100--Hb_001172_010 Hb_000123_210 Hb_000123_210 Hb_004429_100--Hb_000123_210 Hb_000291_060 Hb_000291_060 Hb_001030_110--Hb_000291_060 Hb_154114_010 Hb_154114_010 Hb_001030_110--Hb_154114_010 Hb_000617_100 Hb_000617_100 Hb_001030_110--Hb_000617_100 Hb_000789_310 Hb_000789_310 Hb_001030_110--Hb_000789_310 Hb_002805_190 Hb_002805_190 Hb_001030_110--Hb_002805_190 Hb_001143_180 Hb_001143_180 Hb_001030_110--Hb_001143_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.1053 88.1734 74.9569 44.0766 91.0562 115.064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.0493 52.8294 41.9605 107.514 34.1308

CAGE analysis