Hb_001860_030

Information

Type -
Description -
Location Contig1860: 39551-51994
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10540g
description POPTRDRAFT_554152; suppressor of forked family protein
nr
ID XP_012074246.1
description PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
swissprot
ID P25991
description Protein suppressor of forked OS=Drosophila melanogaster GN=su(f) PE=1 SV=2
trembl
ID A0A067KWM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10295 PE=4 SV=1
Gene Ontology
ID GO:0005634
description tetratricopeptide repeat-like superfamily protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18261: 41542-48490 , PASA_asmbl_18262: 50582-50801
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001860_030 0.0 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
2 Hb_000062_270 0.0588280531 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
3 Hb_028512_020 0.0638842078 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
4 Hb_013399_020 0.0662829709 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
5 Hb_000981_030 0.0668208334 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
6 Hb_004324_130 0.0669012066 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_001635_090 0.0699325853 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
8 Hb_000170_090 0.0703550084 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
9 Hb_105328_020 0.0712563547 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
10 Hb_006588_170 0.0715421116 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
11 Hb_000923_010 0.0723170265 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
12 Hb_000302_310 0.0723648924 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
13 Hb_002681_090 0.0752039893 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
14 Hb_006831_140 0.0760005573 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_002217_030 0.0761761155 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
16 Hb_002026_210 0.0782076339 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
17 Hb_000181_400 0.0784955182 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
18 Hb_028872_090 0.0785906315 - - PREDICTED: urease [Jatropha curcas]
19 Hb_000556_120 0.078661323 - - Spastin, putative [Ricinus communis]
20 Hb_001876_050 0.0795370465 - - hypothetical protein JCGZ_01286 [Jatropha curcas]

Gene co-expression network

sample Hb_001860_030 Hb_001860_030 Hb_000062_270 Hb_000062_270 Hb_001860_030--Hb_000062_270 Hb_028512_020 Hb_028512_020 Hb_001860_030--Hb_028512_020 Hb_013399_020 Hb_013399_020 Hb_001860_030--Hb_013399_020 Hb_000981_030 Hb_000981_030 Hb_001860_030--Hb_000981_030 Hb_004324_130 Hb_004324_130 Hb_001860_030--Hb_004324_130 Hb_001635_090 Hb_001635_090 Hb_001860_030--Hb_001635_090 Hb_000170_090 Hb_000170_090 Hb_000062_270--Hb_000170_090 Hb_000258_110 Hb_000258_110 Hb_000062_270--Hb_000258_110 Hb_000062_270--Hb_013399_020 Hb_004668_090 Hb_004668_090 Hb_000062_270--Hb_004668_090 Hb_004586_220 Hb_004586_220 Hb_000062_270--Hb_004586_220 Hb_002026_210 Hb_002026_210 Hb_028512_020--Hb_002026_210 Hb_000260_330 Hb_000260_330 Hb_028512_020--Hb_000260_330 Hb_004109_230 Hb_004109_230 Hb_028512_020--Hb_004109_230 Hb_000923_010 Hb_000923_010 Hb_028512_020--Hb_000923_010 Hb_014361_070 Hb_014361_070 Hb_028512_020--Hb_014361_070 Hb_013399_020--Hb_000170_090 Hb_013399_020--Hb_000923_010 Hb_105328_020 Hb_105328_020 Hb_013399_020--Hb_105328_020 Hb_000441_220 Hb_000441_220 Hb_013399_020--Hb_000441_220 Hb_003683_020 Hb_003683_020 Hb_013399_020--Hb_003683_020 Hb_093458_040 Hb_093458_040 Hb_013399_020--Hb_093458_040 Hb_001500_140 Hb_001500_140 Hb_000981_030--Hb_001500_140 Hb_179306_020 Hb_179306_020 Hb_000981_030--Hb_179306_020 Hb_006520_040 Hb_006520_040 Hb_000981_030--Hb_006520_040 Hb_005663_110 Hb_005663_110 Hb_000981_030--Hb_005663_110 Hb_000981_030--Hb_000170_090 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_001408_040 Hb_001408_040 Hb_001635_090--Hb_001408_040 Hb_000116_410 Hb_000116_410 Hb_001635_090--Hb_000116_410 Hb_001584_120 Hb_001584_120 Hb_001635_090--Hb_001584_120 Hb_007576_110 Hb_007576_110 Hb_001635_090--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_001635_090--Hb_000173_490 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.21073 10.7388 9.63851 13.8498 10.5461 13.5561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4744 9.37234 7.65922 15.8866 7.82064

CAGE analysis