Hb_002631_200

Information

Type -
Description -
Location Contig2631: 153704-161496
Sequence    

Annotation

kegg
ID rcu:RCOM_1574670
description serine/threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012087364.1
description PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
swissprot
ID Q0VBZ0
description Tyrosine-protein kinase CSK OS=Bos taurus GN=CSK PE=2 SV=1
trembl
ID A0A067JYJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22610 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27473: 153769-160327 , PASA_asmbl_27474: 154096-154242 , PASA_asmbl_27475: 154524-154791 , PASA_asmbl_27476: 162160-171703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_200 0.0 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
2 Hb_000083_270 0.0957310446 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
3 Hb_002153_030 0.0962096227 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
4 Hb_000009_120 0.0969851923 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
5 Hb_000571_160 0.0977727678 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
6 Hb_011861_080 0.101585883 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
7 Hb_185830_070 0.1042271041 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
8 Hb_007904_130 0.1069849736 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_001105_160 0.1084439883 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
10 Hb_006531_020 0.1102069615 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
11 Hb_000402_190 0.111236084 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
12 Hb_001628_070 0.1118758216 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000024_040 0.1128186759 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
14 Hb_000340_490 0.1147264567 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
15 Hb_000574_530 0.114808456 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
16 Hb_002217_220 0.1154385746 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
17 Hb_002005_080 0.1155136614 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
18 Hb_000080_110 0.1157537527 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
19 Hb_004705_020 0.1173915631 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
20 Hb_001414_040 0.118791641 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002631_200 Hb_002631_200 Hb_000083_270 Hb_000083_270 Hb_002631_200--Hb_000083_270 Hb_002153_030 Hb_002153_030 Hb_002631_200--Hb_002153_030 Hb_000009_120 Hb_000009_120 Hb_002631_200--Hb_000009_120 Hb_000571_160 Hb_000571_160 Hb_002631_200--Hb_000571_160 Hb_011861_080 Hb_011861_080 Hb_002631_200--Hb_011861_080 Hb_185830_070 Hb_185830_070 Hb_002631_200--Hb_185830_070 Hb_001699_280 Hb_001699_280 Hb_000083_270--Hb_001699_280 Hb_000631_110 Hb_000631_110 Hb_000083_270--Hb_000631_110 Hb_000340_490 Hb_000340_490 Hb_000083_270--Hb_000340_490 Hb_002005_080 Hb_002005_080 Hb_000083_270--Hb_002005_080 Hb_004705_020 Hb_004705_020 Hb_000083_270--Hb_004705_020 Hb_001628_070 Hb_001628_070 Hb_000083_270--Hb_001628_070 Hb_007904_130 Hb_007904_130 Hb_002153_030--Hb_007904_130 Hb_002391_210 Hb_002391_210 Hb_002153_030--Hb_002391_210 Hb_001170_030 Hb_001170_030 Hb_002153_030--Hb_001170_030 Hb_000402_190 Hb_000402_190 Hb_002153_030--Hb_000402_190 Hb_005081_020 Hb_005081_020 Hb_002153_030--Hb_005081_020 Hb_003849_240 Hb_003849_240 Hb_000009_120--Hb_003849_240 Hb_001414_040 Hb_001414_040 Hb_000009_120--Hb_001414_040 Hb_002889_020 Hb_002889_020 Hb_000009_120--Hb_002889_020 Hb_005333_050 Hb_005333_050 Hb_000009_120--Hb_005333_050 Hb_006829_100 Hb_006829_100 Hb_000009_120--Hb_006829_100 Hb_000080_110 Hb_000080_110 Hb_000009_120--Hb_000080_110 Hb_000049_150 Hb_000049_150 Hb_000571_160--Hb_000049_150 Hb_004109_380 Hb_004109_380 Hb_000571_160--Hb_004109_380 Hb_010809_010 Hb_010809_010 Hb_000571_160--Hb_010809_010 Hb_006907_140 Hb_006907_140 Hb_000571_160--Hb_006907_140 Hb_007576_210 Hb_007576_210 Hb_000571_160--Hb_007576_210 Hb_011828_030 Hb_011828_030 Hb_000571_160--Hb_011828_030 Hb_011861_080--Hb_001414_040 Hb_011861_080--Hb_000571_160 Hb_011861_080--Hb_006907_140 Hb_011861_080--Hb_000049_150 Hb_011287_050 Hb_011287_050 Hb_011861_080--Hb_011287_050 Hb_000940_150 Hb_000940_150 Hb_185830_070--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_185830_070--Hb_000175_120 Hb_002027_190 Hb_002027_190 Hb_185830_070--Hb_002027_190 Hb_185830_070--Hb_000631_110 Hb_000574_530 Hb_000574_530 Hb_185830_070--Hb_000574_530 Hb_004218_250 Hb_004218_250 Hb_185830_070--Hb_004218_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.82134 30.3744 7.31556 15.5098 10.5013 9.9559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.37721 5.17232 16.0654 31.1663 13.144

CAGE analysis