Hb_004109_380

Information

Type -
Description -
Location Contig4109: 396239-455300
Sequence    

Annotation

kegg
ID pmum:103324716
description callose synthase 9
nr
ID XP_009364085.1
description PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
swissprot
ID Q9SFU6
description Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=2
trembl
ID A0A067LAZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19418 PE=4 SV=1
Gene Ontology
ID GO:0000148
description callose synthase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40684: 396419-436578 , PASA_asmbl_40686: 452920-453042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_380 0.0 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
2 Hb_001031_090 0.0734005062 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
3 Hb_004223_160 0.0752055688 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
4 Hb_000571_160 0.0850752873 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
5 Hb_000105_040 0.0858214062 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
6 Hb_002005_030 0.0858658256 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
7 Hb_001699_280 0.0889777939 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
8 Hb_001341_160 0.09036687 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
9 Hb_001662_180 0.0906448568 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
10 Hb_000049_150 0.090756111 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_006907_140 0.0918643133 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000170_100 0.0919169855 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
13 Hb_003604_050 0.0942007409 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
14 Hb_008948_140 0.0943843418 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
15 Hb_001477_020 0.095837267 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
16 Hb_001951_170 0.0960817559 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
17 Hb_000172_340 0.0971221836 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
18 Hb_001124_050 0.097125443 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
19 Hb_007576_210 0.0972601488 - - PREDICTED: protein furry homolog [Jatropha curcas]
20 Hb_123531_010 0.0974281573 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_380 Hb_004109_380 Hb_001031_090 Hb_001031_090 Hb_004109_380--Hb_001031_090 Hb_004223_160 Hb_004223_160 Hb_004109_380--Hb_004223_160 Hb_000571_160 Hb_000571_160 Hb_004109_380--Hb_000571_160 Hb_000105_040 Hb_000105_040 Hb_004109_380--Hb_000105_040 Hb_002005_030 Hb_002005_030 Hb_004109_380--Hb_002005_030 Hb_001699_280 Hb_001699_280 Hb_004109_380--Hb_001699_280 Hb_016734_060 Hb_016734_060 Hb_001031_090--Hb_016734_060 Hb_001031_090--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001031_090--Hb_008948_140 Hb_049436_010 Hb_049436_010 Hb_001031_090--Hb_049436_010 Hb_002889_020 Hb_002889_020 Hb_001031_090--Hb_002889_020 Hb_005832_010 Hb_005832_010 Hb_004223_160--Hb_005832_010 Hb_001953_120 Hb_001953_120 Hb_004223_160--Hb_001953_120 Hb_001951_170 Hb_001951_170 Hb_004223_160--Hb_001951_170 Hb_009476_090 Hb_009476_090 Hb_004223_160--Hb_009476_090 Hb_001904_030 Hb_001904_030 Hb_004223_160--Hb_001904_030 Hb_003142_040 Hb_003142_040 Hb_004223_160--Hb_003142_040 Hb_000049_150 Hb_000049_150 Hb_000571_160--Hb_000049_150 Hb_010809_010 Hb_010809_010 Hb_000571_160--Hb_010809_010 Hb_006907_140 Hb_006907_140 Hb_000571_160--Hb_006907_140 Hb_007576_210 Hb_007576_210 Hb_000571_160--Hb_007576_210 Hb_011828_030 Hb_011828_030 Hb_000571_160--Hb_011828_030 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_000105_040--Hb_001699_280 Hb_003581_170 Hb_003581_170 Hb_000105_040--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_000105_040--Hb_001951_170 Hb_000172_340 Hb_000172_340 Hb_002005_030--Hb_000172_340 Hb_002005_030--Hb_006907_140 Hb_001341_160 Hb_001341_160 Hb_002005_030--Hb_001341_160 Hb_000010_420 Hb_000010_420 Hb_002005_030--Hb_000010_420 Hb_002005_030--Hb_001904_030 Hb_007245_020 Hb_007245_020 Hb_002005_030--Hb_007245_020 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_001699_280--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001699_280--Hb_001951_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.82372 39.2081 11.2009 21.8987 16.5134 15.9221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80113 10.2971 6.00238 33.6015 22.5845

CAGE analysis