Hb_001031_090

Information

Type -
Description -
Location Contig1031: 102854-131610
Sequence    

Annotation

kegg
ID rcu:RCOM_0610410
description Translational activator GCN1, putative
nr
ID XP_012089387.1
description PREDICTED: translational activator GCN1 [Jatropha curcas]
swissprot
ID Q92616
description Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6
trembl
ID B9S7P8
description Translational activator GCN1, putative OS=Ricinus communis GN=RCOM_0610410 PE=4 SV=1
Gene Ontology
ID GO:0030117
description translational activator gcn1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01268: 102883-104862 , PASA_asmbl_01269: 104894-105145 , PASA_asmbl_01270: 110989-124483 , PASA_asmbl_01271: 110989-117013 , PASA_asmbl_01272: 126046-128085 , PASA_asmbl_01273: 129011-130226 , PASA_asmbl_01274: 130314-130614 , PASA_asmbl_01275: 130875-131001 , PASA_asmbl_01276: 132434-132630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001031_090 0.0 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
2 Hb_016734_060 0.0621177909 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
3 Hb_004109_380 0.0734005062 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
4 Hb_004223_160 0.0768614141 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
5 Hb_008948_140 0.080147163 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
6 Hb_049436_010 0.0853441247 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
7 Hb_002889_020 0.0879106011 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
8 Hb_000220_120 0.0891713378 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
9 Hb_000035_010 0.0914395865 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
10 Hb_001167_050 0.0914572425 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
11 Hb_003849_240 0.0917938261 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_002805_210 0.091857708 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
13 Hb_000631_120 0.0918687904 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
14 Hb_007765_030 0.0930248914 - - PREDICTED: neutral ceramidase [Jatropha curcas]
15 Hb_000105_040 0.0942728513 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
16 Hb_005542_140 0.0957653816 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
17 Hb_000926_150 0.09589254 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
18 Hb_001951_170 0.0962910036 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
19 Hb_000049_250 0.0967921768 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
20 Hb_004934_050 0.0973969413 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001031_090 Hb_001031_090 Hb_016734_060 Hb_016734_060 Hb_001031_090--Hb_016734_060 Hb_004109_380 Hb_004109_380 Hb_001031_090--Hb_004109_380 Hb_004223_160 Hb_004223_160 Hb_001031_090--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001031_090--Hb_008948_140 Hb_049436_010 Hb_049436_010 Hb_001031_090--Hb_049436_010 Hb_002889_020 Hb_002889_020 Hb_001031_090--Hb_002889_020 Hb_002046_010 Hb_002046_010 Hb_016734_060--Hb_002046_010 Hb_002217_430 Hb_002217_430 Hb_016734_060--Hb_002217_430 Hb_002016_090 Hb_002016_090 Hb_016734_060--Hb_002016_090 Hb_002805_210 Hb_002805_210 Hb_016734_060--Hb_002805_210 Hb_027472_220 Hb_027472_220 Hb_016734_060--Hb_027472_220 Hb_004109_380--Hb_004223_160 Hb_000571_160 Hb_000571_160 Hb_004109_380--Hb_000571_160 Hb_000105_040 Hb_000105_040 Hb_004109_380--Hb_000105_040 Hb_002005_030 Hb_002005_030 Hb_004109_380--Hb_002005_030 Hb_001699_280 Hb_001699_280 Hb_004109_380--Hb_001699_280 Hb_005832_010 Hb_005832_010 Hb_004223_160--Hb_005832_010 Hb_001953_120 Hb_001953_120 Hb_004223_160--Hb_001953_120 Hb_001951_170 Hb_001951_170 Hb_004223_160--Hb_001951_170 Hb_009476_090 Hb_009476_090 Hb_004223_160--Hb_009476_090 Hb_001904_030 Hb_001904_030 Hb_004223_160--Hb_001904_030 Hb_003142_040 Hb_003142_040 Hb_004223_160--Hb_003142_040 Hb_000479_240 Hb_000479_240 Hb_008948_140--Hb_000479_240 Hb_000856_300 Hb_000856_300 Hb_008948_140--Hb_000856_300 Hb_001341_160 Hb_001341_160 Hb_008948_140--Hb_001341_160 Hb_000862_040 Hb_000862_040 Hb_008948_140--Hb_000862_040 Hb_001723_010 Hb_001723_010 Hb_008948_140--Hb_001723_010 Hb_000926_150 Hb_000926_150 Hb_008948_140--Hb_000926_150 Hb_004934_050 Hb_004934_050 Hb_049436_010--Hb_004934_050 Hb_000905_170 Hb_000905_170 Hb_049436_010--Hb_000905_170 Hb_000920_300 Hb_000920_300 Hb_049436_010--Hb_000920_300 Hb_002477_090 Hb_002477_090 Hb_049436_010--Hb_002477_090 Hb_119530_010 Hb_119530_010 Hb_049436_010--Hb_119530_010 Hb_000003_100 Hb_000003_100 Hb_002889_020--Hb_000003_100 Hb_000331_580 Hb_000331_580 Hb_002889_020--Hb_000331_580 Hb_011618_090 Hb_011618_090 Hb_002889_020--Hb_011618_090 Hb_012286_040 Hb_012286_040 Hb_002889_020--Hb_012286_040 Hb_019840_030 Hb_019840_030 Hb_002889_020--Hb_019840_030 Hb_001167_050 Hb_001167_050 Hb_002889_020--Hb_001167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.99686 12.9014 5.77458 7.38467 5.44803 6.4028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13572 5.00173 2.71938 14.2897 7.74705

CAGE analysis