Hb_002217_430

Information

Type -
Description -
Location Contig2217: 350545-363388
Sequence    

Annotation

kegg
ID rcu:RCOM_1001010
description Flowering time control protein FCA, putative
nr
ID XP_012084110.1
description PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
swissprot
ID O04425
description Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2
trembl
ID A0A067K7Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19024 PE=4 SV=1
Gene Ontology
ID GO:0000166
description flowering time control protein fca isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22949: 350813-360761 , PASA_asmbl_22951: 357809-358005 , PASA_asmbl_22952: 360788-363268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_430 0.0 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
2 Hb_027472_220 0.0676328102 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
3 Hb_005542_140 0.0725813233 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
4 Hb_001668_010 0.0769318502 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
5 Hb_016734_060 0.0773814439 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
6 Hb_000398_080 0.0794847136 - - tip120, putative [Ricinus communis]
7 Hb_002350_010 0.0806599527 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
8 Hb_088144_020 0.0809522956 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
9 Hb_005402_040 0.0820011803 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
10 Hb_001277_020 0.082291441 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
11 Hb_000823_030 0.0826352577 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
12 Hb_002046_010 0.0826745254 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000025_690 0.0846997392 - - spliceosome associated protein, putative [Ricinus communis]
14 Hb_001430_080 0.0858072933 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
15 Hb_005048_100 0.0858483438 - - secretory carrier membrane protein, putative [Ricinus communis]
16 Hb_001157_160 0.0863591105 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
17 Hb_003943_020 0.08663702 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
18 Hb_002890_120 0.086907024 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
19 Hb_007426_060 0.0872683657 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
20 Hb_000025_710 0.0881253653 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]

Gene co-expression network

sample Hb_002217_430 Hb_002217_430 Hb_027472_220 Hb_027472_220 Hb_002217_430--Hb_027472_220 Hb_005542_140 Hb_005542_140 Hb_002217_430--Hb_005542_140 Hb_001668_010 Hb_001668_010 Hb_002217_430--Hb_001668_010 Hb_016734_060 Hb_016734_060 Hb_002217_430--Hb_016734_060 Hb_000398_080 Hb_000398_080 Hb_002217_430--Hb_000398_080 Hb_002350_010 Hb_002350_010 Hb_002217_430--Hb_002350_010 Hb_000934_210 Hb_000934_210 Hb_027472_220--Hb_000934_210 Hb_005402_040 Hb_005402_040 Hb_027472_220--Hb_005402_040 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_000862_040 Hb_000862_040 Hb_005542_140--Hb_000862_040 Hb_005568_040 Hb_005568_040 Hb_005542_140--Hb_005568_040 Hb_005542_140--Hb_001668_010 Hb_001673_050 Hb_001673_050 Hb_001668_010--Hb_001673_050 Hb_134362_010 Hb_134362_010 Hb_001668_010--Hb_134362_010 Hb_000635_030 Hb_000635_030 Hb_001668_010--Hb_000635_030 Hb_001668_010--Hb_027472_220 Hb_000011_100 Hb_000011_100 Hb_001668_010--Hb_000011_100 Hb_001031_090 Hb_001031_090 Hb_016734_060--Hb_001031_090 Hb_002046_010 Hb_002046_010 Hb_016734_060--Hb_002046_010 Hb_002016_090 Hb_002016_090 Hb_016734_060--Hb_002016_090 Hb_016734_060--Hb_002805_210 Hb_016734_060--Hb_027472_220 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000398_080--Hb_000011_100 Hb_000603_030 Hb_000603_030 Hb_000398_080--Hb_000603_030 Hb_004267_040 Hb_004267_040 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130 Hb_001191_120 Hb_001191_120 Hb_002350_010--Hb_001191_120 Hb_000671_070 Hb_000671_070 Hb_002350_010--Hb_000671_070 Hb_000025_710 Hb_000025_710 Hb_002350_010--Hb_000025_710 Hb_000473_110 Hb_000473_110 Hb_002350_010--Hb_000473_110 Hb_002350_010--Hb_000563_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24485 13.0741 8.96939 5.439 10.5134 8.2673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.77865 5.82947 4.24686 13.9692 9.62446

CAGE analysis