Hb_000025_790

Information

Type transcription factor
Description TF Family: GRAS
Location Contig25: 724641-727021
Sequence    

Annotation

kegg
ID rcu:RCOM_1244860
description transcription factor, putative
nr
ID XP_012087647.1
description PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
swissprot
ID Q9LPR8
description Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1
trembl
ID A0A067JLM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25436 PE=4 SV=1
Gene Ontology
ID GO:0005634
description scarecrow-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26182: 724658-725282 , PASA_asmbl_26183: 725298-726176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_790 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
2 Hb_000002_010 0.0832917541 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
3 Hb_000964_130 0.091024656 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
4 Hb_000111_290 0.0915975382 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
5 Hb_010863_010 0.0921542728 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
6 Hb_012490_080 0.0947183336 - - threonine synthase, putative [Ricinus communis]
7 Hb_000614_240 0.0970253616 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
8 Hb_000181_320 0.0973025829 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
9 Hb_005396_150 0.0974105179 - - protein binding protein, putative [Ricinus communis]
10 Hb_001053_090 0.0998048661 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
11 Hb_001170_030 0.1007256975 - - synaptonemal complex protein, putative [Ricinus communis]
12 Hb_001417_030 0.1012366862 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
13 Hb_004449_080 0.1012612293 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
14 Hb_000107_490 0.1020436357 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_002391_310 0.1029194196 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
16 Hb_003847_030 0.103028059 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
17 Hb_000866_170 0.1031667195 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002400_410 0.1036725321 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
19 Hb_003294_070 0.1047205602 - - hypothetical protein RCOM_1714550 [Ricinus communis]
20 Hb_001999_090 0.1047668557 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000025_790 Hb_000025_790 Hb_000002_010 Hb_000002_010 Hb_000025_790--Hb_000002_010 Hb_000964_130 Hb_000964_130 Hb_000025_790--Hb_000964_130 Hb_000111_290 Hb_000111_290 Hb_000025_790--Hb_000111_290 Hb_010863_010 Hb_010863_010 Hb_000025_790--Hb_010863_010 Hb_012490_080 Hb_012490_080 Hb_000025_790--Hb_012490_080 Hb_000614_240 Hb_000614_240 Hb_000025_790--Hb_000614_240 Hb_010174_110 Hb_010174_110 Hb_000002_010--Hb_010174_110 Hb_001341_170 Hb_001341_170 Hb_000002_010--Hb_001341_170 Hb_000107_490 Hb_000107_490 Hb_000002_010--Hb_000107_490 Hb_000556_160 Hb_000556_160 Hb_000002_010--Hb_000556_160 Hb_000002_010--Hb_000111_290 Hb_003253_040 Hb_003253_040 Hb_000002_010--Hb_003253_040 Hb_000808_030 Hb_000808_030 Hb_000964_130--Hb_000808_030 Hb_001999_090 Hb_001999_090 Hb_000964_130--Hb_001999_090 Hb_000866_120 Hb_000866_120 Hb_000964_130--Hb_000866_120 Hb_003747_100 Hb_003747_100 Hb_000964_130--Hb_003747_100 Hb_000017_220 Hb_000017_220 Hb_000964_130--Hb_000017_220 Hb_002007_160 Hb_002007_160 Hb_000964_130--Hb_002007_160 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_010863_010--Hb_000614_240 Hb_000120_080 Hb_000120_080 Hb_010863_010--Hb_000120_080 Hb_004787_050 Hb_004787_050 Hb_010863_010--Hb_004787_050 Hb_005634_010 Hb_005634_010 Hb_010863_010--Hb_005634_010 Hb_002471_090 Hb_002471_090 Hb_010863_010--Hb_002471_090 Hb_010863_010--Hb_002456_010 Hb_012490_080--Hb_000107_490 Hb_000406_140 Hb_000406_140 Hb_012490_080--Hb_000406_140 Hb_006938_080 Hb_006938_080 Hb_012490_080--Hb_006938_080 Hb_000866_170 Hb_000866_170 Hb_012490_080--Hb_000866_170 Hb_000890_210 Hb_000890_210 Hb_012490_080--Hb_000890_210 Hb_000646_050 Hb_000646_050 Hb_012490_080--Hb_000646_050 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_000614_240--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76731 5.52705 1.85658 3.64174 2.29477 3.50575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01452 4.22315 5.9623 7.67462 5.04747

CAGE analysis