Hb_012490_080

Information

Type -
Description -
Location Contig12490: 88147-91570
Sequence    

Annotation

kegg
ID rcu:RCOM_1046290
description threonine synthase, putative (EC:4.2.3.1)
nr
ID XP_002514088.1
description threonine synthase, putative [Ricinus communis]
swissprot
ID Q9S7B5
description Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1
trembl
ID B9RK44
description Threonine synthase, putative OS=Ricinus communis GN=RCOM_1046290 PE=4 SV=1
Gene Ontology
ID GO:0004795
description threonine chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07575: 88244-91452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_080 0.0 - - threonine synthase, putative [Ricinus communis]
2 Hb_000107_490 0.0735596931 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
3 Hb_000406_140 0.0773541293 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006938_080 0.0821703545 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
5 Hb_000866_170 0.0848381444 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000890_210 0.0864268945 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
7 Hb_000646_050 0.0869679145 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
8 Hb_003168_110 0.0893243481 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
9 Hb_000603_280 0.0895436159 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
10 Hb_011016_050 0.0901500445 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
11 Hb_003544_110 0.0902305965 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
12 Hb_000317_370 0.0915143135 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
13 Hb_000245_040 0.091666854 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
14 Hb_000964_130 0.0919961386 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
15 Hb_000083_120 0.0942821232 - - transcription factor, putative [Ricinus communis]
16 Hb_007441_220 0.0945430476 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
17 Hb_004672_040 0.094691982 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
18 Hb_000025_790 0.0947183336 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
19 Hb_001366_310 0.0950824319 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
20 Hb_000111_290 0.0955480035 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]

Gene co-expression network

sample Hb_012490_080 Hb_012490_080 Hb_000107_490 Hb_000107_490 Hb_012490_080--Hb_000107_490 Hb_000406_140 Hb_000406_140 Hb_012490_080--Hb_000406_140 Hb_006938_080 Hb_006938_080 Hb_012490_080--Hb_006938_080 Hb_000866_170 Hb_000866_170 Hb_012490_080--Hb_000866_170 Hb_000890_210 Hb_000890_210 Hb_012490_080--Hb_000890_210 Hb_000646_050 Hb_000646_050 Hb_012490_080--Hb_000646_050 Hb_000245_040 Hb_000245_040 Hb_000107_490--Hb_000245_040 Hb_000107_490--Hb_000890_210 Hb_000111_290 Hb_000111_290 Hb_000107_490--Hb_000111_290 Hb_010174_110 Hb_010174_110 Hb_000107_490--Hb_010174_110 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_004724_150 Hb_004724_150 Hb_000107_490--Hb_004724_150 Hb_000497_300 Hb_000497_300 Hb_000406_140--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000406_140--Hb_164010_030 Hb_001163_100 Hb_001163_100 Hb_000406_140--Hb_001163_100 Hb_001898_080 Hb_001898_080 Hb_000406_140--Hb_001898_080 Hb_000009_560 Hb_000009_560 Hb_000406_140--Hb_000009_560 Hb_006938_080--Hb_000245_040 Hb_002809_050 Hb_002809_050 Hb_006938_080--Hb_002809_050 Hb_006938_080--Hb_000646_050 Hb_006938_080--Hb_000866_170 Hb_006938_080--Hb_000107_490 Hb_000395_190 Hb_000395_190 Hb_006938_080--Hb_000395_190 Hb_000866_170--Hb_000245_040 Hb_000297_010 Hb_000297_010 Hb_000866_170--Hb_000297_010 Hb_000866_170--Hb_000395_190 Hb_000866_170--Hb_000890_210 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_000890_210--Hb_000245_040 Hb_001617_050 Hb_001617_050 Hb_000646_050--Hb_001617_050 Hb_005348_140 Hb_005348_140 Hb_000646_050--Hb_005348_140 Hb_000003_250 Hb_000003_250 Hb_000646_050--Hb_000003_250 Hb_065525_040 Hb_065525_040 Hb_000646_050--Hb_065525_040 Hb_027380_130 Hb_027380_130 Hb_000646_050--Hb_027380_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.9784 28.148 11.1542 23.4281 13.2364 20.3887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7429 17.4067 34.4753 25.845 17.9698

CAGE analysis