Hb_000406_140

Information

Type -
Description -
Location Contig406: 110943-113335
Sequence    

Annotation

kegg
ID rcu:RCOM_1429280
description hypothetical protein
nr
ID XP_002512283.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LUV4
description FRIGIDA-like protein 4a OS=Arabidopsis thaliana GN=FRL4A PE=2 SV=1
trembl
ID B9REW4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1429280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000497_300 0.0727612673 - - peroxisomal membrane protein [Hevea brasiliensis]
3 Hb_164010_030 0.0730141162 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
4 Hb_001163_100 0.0758878104 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_012490_080 0.0773541293 - - threonine synthase, putative [Ricinus communis]
6 Hb_001898_080 0.0774980616 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
7 Hb_000009_560 0.0783190477 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
8 Hb_003847_030 0.0804446817 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
9 Hb_005051_020 0.0817210286 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
10 Hb_004672_040 0.0822014836 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
11 Hb_004712_130 0.0823248344 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
12 Hb_000192_080 0.0830291597 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
13 Hb_000072_120 0.0845496753 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_001789_150 0.0848715443 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
15 Hb_011016_050 0.0853533167 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
16 Hb_000574_450 0.0860941266 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
17 Hb_004787_050 0.0866985045 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
18 Hb_000049_210 0.0875619426 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
19 Hb_001014_030 0.0893548047 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001679_050 0.091260238 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]

Gene co-expression network

sample Hb_000406_140 Hb_000406_140 Hb_000497_300 Hb_000497_300 Hb_000406_140--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000406_140--Hb_164010_030 Hb_001163_100 Hb_001163_100 Hb_000406_140--Hb_001163_100 Hb_012490_080 Hb_012490_080 Hb_000406_140--Hb_012490_080 Hb_001898_080 Hb_001898_080 Hb_000406_140--Hb_001898_080 Hb_000009_560 Hb_000009_560 Hb_000406_140--Hb_000009_560 Hb_010344_050 Hb_010344_050 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_001352_020 Hb_001352_020 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150 Hb_164010_030--Hb_000116_260 Hb_001377_490 Hb_001377_490 Hb_164010_030--Hb_001377_490 Hb_164010_030--Hb_001163_100 Hb_000260_010 Hb_000260_010 Hb_164010_030--Hb_000260_010 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030 Hb_001163_100--Hb_000260_010 Hb_000340_230 Hb_000340_230 Hb_001163_100--Hb_000340_230 Hb_004672_040 Hb_004672_040 Hb_001163_100--Hb_004672_040 Hb_001163_100--Hb_000009_560 Hb_001163_100--Hb_001377_490 Hb_000107_490 Hb_000107_490 Hb_012490_080--Hb_000107_490 Hb_006938_080 Hb_006938_080 Hb_012490_080--Hb_006938_080 Hb_000866_170 Hb_000866_170 Hb_012490_080--Hb_000866_170 Hb_000890_210 Hb_000890_210 Hb_012490_080--Hb_000890_210 Hb_000646_050 Hb_000646_050 Hb_012490_080--Hb_000646_050 Hb_007416_090 Hb_007416_090 Hb_001898_080--Hb_007416_090 Hb_001898_080--Hb_001789_150 Hb_003847_030 Hb_003847_030 Hb_001898_080--Hb_003847_030 Hb_000787_020 Hb_000787_020 Hb_001898_080--Hb_000787_020 Hb_000505_150 Hb_000505_150 Hb_001898_080--Hb_000505_150 Hb_000192_080 Hb_000192_080 Hb_000009_560--Hb_000192_080 Hb_000009_560--Hb_001377_490 Hb_015934_040 Hb_015934_040 Hb_000009_560--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000009_560--Hb_001538_130 Hb_003168_110 Hb_003168_110 Hb_000009_560--Hb_003168_110 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00851 10.1806 6.38431 12.7127 5.63247 9.67279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.99385 9.74511 16.6973 10.716 9.78643

CAGE analysis