Hb_000120_230

Information

Type -
Description -
Location Contig120: 142155-147920
Sequence    

Annotation

kegg
ID cit:102630661
description pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like
nr
ID XP_012068610.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
swissprot
ID Q42656
description Alpha-galactosidase OS=Coffea arabica PE=1 SV=1
trembl
ID A0A0D2RDY6
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G014400 PE=4 SV=1
Gene Ontology
ID GO:0052692
description pentatricopeptide repeat superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06081: 142865-144092 , PASA_asmbl_06082: 144667-145098 , PASA_asmbl_06083: 145550-145971 , PASA_asmbl_06084: 147387-147635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_230 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
2 Hb_011287_010 0.1165538868 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_029510_100 0.1220659419 - - scab resistance family protein [Populus trichocarpa]
4 Hb_008468_030 0.1239749763 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_006683_020 0.1256948988 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
6 Hb_005914_140 0.1266674197 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
7 Hb_005970_010 0.1266961328 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
8 Hb_005550_010 0.1282645749 - - PREDICTED: 3-ketoacyl-CoA synthase 4-like [Jatropha curcas]
9 Hb_000649_120 0.1287324178 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_002217_220 0.1288606601 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
11 Hb_001014_190 0.1316539673 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
12 Hb_009646_010 0.1365038026 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
13 Hb_111051_010 0.1370201841 - - Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_000625_090 0.1382824684 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008246_020 0.1404218755 - - amidophosphoribosyltransferase, putative [Ricinus communis]
16 Hb_002272_170 0.1410287817 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
17 Hb_001900_100 0.1413138257 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
18 Hb_004094_020 0.142996942 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
19 Hb_000836_550 0.1435688641 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
20 Hb_000260_660 0.1442260975 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000120_230 Hb_000120_230 Hb_011287_010 Hb_011287_010 Hb_000120_230--Hb_011287_010 Hb_029510_100 Hb_029510_100 Hb_000120_230--Hb_029510_100 Hb_008468_030 Hb_008468_030 Hb_000120_230--Hb_008468_030 Hb_006683_020 Hb_006683_020 Hb_000120_230--Hb_006683_020 Hb_005914_140 Hb_005914_140 Hb_000120_230--Hb_005914_140 Hb_005970_010 Hb_005970_010 Hb_000120_230--Hb_005970_010 Hb_002217_220 Hb_002217_220 Hb_011287_010--Hb_002217_220 Hb_000395_220 Hb_000395_220 Hb_011287_010--Hb_000395_220 Hb_000227_040 Hb_000227_040 Hb_011287_010--Hb_000227_040 Hb_000260_660 Hb_000260_660 Hb_011287_010--Hb_000260_660 Hb_001642_070 Hb_001642_070 Hb_011287_010--Hb_001642_070 Hb_012760_040 Hb_012760_040 Hb_011287_010--Hb_012760_040 Hb_001014_190 Hb_001014_190 Hb_029510_100--Hb_001014_190 Hb_004330_080 Hb_004330_080 Hb_029510_100--Hb_004330_080 Hb_019280_020 Hb_019280_020 Hb_029510_100--Hb_019280_020 Hb_004094_020 Hb_004094_020 Hb_029510_100--Hb_004094_020 Hb_012362_030 Hb_012362_030 Hb_029510_100--Hb_012362_030 Hb_007576_200 Hb_007576_200 Hb_008468_030--Hb_007576_200 Hb_000649_120 Hb_000649_120 Hb_008468_030--Hb_000649_120 Hb_000056_280 Hb_000056_280 Hb_008468_030--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_008468_030--Hb_000025_400 Hb_000028_340 Hb_000028_340 Hb_008468_030--Hb_000028_340 Hb_001097_040 Hb_001097_040 Hb_006683_020--Hb_001097_040 Hb_016734_010 Hb_016734_010 Hb_006683_020--Hb_016734_010 Hb_019280_010 Hb_019280_010 Hb_006683_020--Hb_019280_010 Hb_000683_050 Hb_000683_050 Hb_006683_020--Hb_000683_050 Hb_000701_030 Hb_000701_030 Hb_006683_020--Hb_000701_030 Hb_006683_020--Hb_005914_140 Hb_000928_190 Hb_000928_190 Hb_005914_140--Hb_000928_190 Hb_001318_050 Hb_001318_050 Hb_005914_140--Hb_001318_050 Hb_005914_140--Hb_004094_020 Hb_132880_040 Hb_132880_040 Hb_005914_140--Hb_132880_040 Hb_005914_140--Hb_019280_010 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_000000_120 Hb_000000_120 Hb_005970_010--Hb_000000_120 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_005970_010--Hb_001097_040 Hb_003506_020 Hb_003506_020 Hb_005970_010--Hb_003506_020 Hb_028077_020 Hb_028077_020 Hb_005970_010--Hb_028077_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.296934 1.49074 0.447684 2.19631 0.276226 0.559898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.414522 0.452475 0.624771 2.10675 0.562037

CAGE analysis