Hb_028077_020

Information

Type -
Description -
Location Contig28077: 2421-7265
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID XP_002527482.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29313: 2223-2785 , PASA_asmbl_29314: 4449-4753 , PASA_asmbl_29315: 4917-5802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028077_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001103_090 0.0907706412 - - PREDICTED: patellin-3 [Populus euphratica]
3 Hb_001675_320 0.0991745906 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
4 Hb_000705_180 0.0993061386 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
5 Hb_001009_150 0.1010162531 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
6 Hb_001097_040 0.1011127494 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
7 Hb_005970_010 0.1039453793 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
8 Hb_005000_090 0.1054375074 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
9 Hb_006683_020 0.1100298628 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
10 Hb_000000_120 0.1112735351 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
11 Hb_001085_080 0.1132236536 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
12 Hb_002739_120 0.1144089642 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
13 Hb_003506_020 0.1144637426 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
14 Hb_000085_260 0.1147213092 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
15 Hb_003599_030 0.1155472484 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
16 Hb_023765_010 0.1160793125 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_002072_010 0.1176372088 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000265_140 0.1192841499 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
19 Hb_001159_030 0.1196563467 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_000679_100 0.119898924 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_028077_020 Hb_028077_020 Hb_001103_090 Hb_001103_090 Hb_028077_020--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_028077_020--Hb_001675_320 Hb_000705_180 Hb_000705_180 Hb_028077_020--Hb_000705_180 Hb_001009_150 Hb_001009_150 Hb_028077_020--Hb_001009_150 Hb_001097_040 Hb_001097_040 Hb_028077_020--Hb_001097_040 Hb_005970_010 Hb_005970_010 Hb_028077_020--Hb_005970_010 Hb_001103_090--Hb_001675_320 Hb_001226_110 Hb_001226_110 Hb_001103_090--Hb_001226_110 Hb_000205_280 Hb_000205_280 Hb_001103_090--Hb_000205_280 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_000260_780 Hb_000260_780 Hb_001103_090--Hb_000260_780 Hb_001878_060 Hb_001878_060 Hb_001675_320--Hb_001878_060 Hb_001675_320--Hb_000205_280 Hb_003849_220 Hb_003849_220 Hb_001675_320--Hb_003849_220 Hb_003599_030 Hb_003599_030 Hb_001675_320--Hb_003599_030 Hb_000705_180--Hb_003599_030 Hb_009372_020 Hb_009372_020 Hb_000705_180--Hb_009372_020 Hb_004375_110 Hb_004375_110 Hb_000705_180--Hb_004375_110 Hb_000705_180--Hb_001103_090 Hb_000705_180--Hb_001259_120 Hb_002739_120 Hb_002739_120 Hb_001009_150--Hb_002739_120 Hb_010407_030 Hb_010407_030 Hb_001009_150--Hb_010407_030 Hb_001195_420 Hb_001195_420 Hb_001009_150--Hb_001195_420 Hb_000318_040 Hb_000318_040 Hb_001009_150--Hb_000318_040 Hb_006949_060 Hb_006949_060 Hb_001009_150--Hb_006949_060 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_005970_010--Hb_001085_080 Hb_000000_120 Hb_000000_120 Hb_005970_010--Hb_000000_120 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_005970_010--Hb_001097_040 Hb_003506_020 Hb_003506_020 Hb_005970_010--Hb_003506_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54697 4.20945 2.03911 6.98445 1.62868 1.14302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.851935 0.893891 1.03929 3.53987 2.95508

CAGE analysis