Hb_001675_320

Information

Type -
Description -
Location Contig1675: 254093-258933
Sequence    

Annotation

kegg
ID rcu:RCOM_1492630
description hypothetical protein
nr
ID XP_012073399.1
description PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06322 PE=4 SV=1
Gene Ontology
ID GO:0005768
description PREDICTED: uncharacterized protein LOC105635025

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15537: 254109-258789 , PASA_asmbl_15539: 255980-256429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_320 0.0 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
2 Hb_001103_090 0.0722330502 - - PREDICTED: patellin-3 [Populus euphratica]
3 Hb_001878_060 0.0954093289 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
4 Hb_000205_280 0.0960735895 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
5 Hb_003849_220 0.0979617767 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
6 Hb_028077_020 0.0991745906 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003599_030 0.1003752267 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
8 Hb_000705_180 0.1018844611 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
9 Hb_001009_150 0.1082708265 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
10 Hb_000260_780 0.1100804511 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
11 Hb_000203_270 0.1101405099 - - alpha-xylosidase, putative [Ricinus communis]
12 Hb_001259_120 0.1115907886 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
13 Hb_002739_120 0.1118484575 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
14 Hb_004375_110 0.1122551733 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
15 Hb_003964_110 0.1129865211 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
16 Hb_001085_080 0.1143508354 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
17 Hb_000359_190 0.1145003884 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
18 Hb_009372_020 0.1148841042 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
19 Hb_003506_020 0.1156452231 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
20 Hb_158845_060 0.1156948793 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001675_320 Hb_001675_320 Hb_001103_090 Hb_001103_090 Hb_001675_320--Hb_001103_090 Hb_001878_060 Hb_001878_060 Hb_001675_320--Hb_001878_060 Hb_000205_280 Hb_000205_280 Hb_001675_320--Hb_000205_280 Hb_003849_220 Hb_003849_220 Hb_001675_320--Hb_003849_220 Hb_028077_020 Hb_028077_020 Hb_001675_320--Hb_028077_020 Hb_003599_030 Hb_003599_030 Hb_001675_320--Hb_003599_030 Hb_001226_110 Hb_001226_110 Hb_001103_090--Hb_001226_110 Hb_001103_090--Hb_000205_280 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_000260_780 Hb_000260_780 Hb_001103_090--Hb_000260_780 Hb_016461_020 Hb_016461_020 Hb_001878_060--Hb_016461_020 Hb_000579_130 Hb_000579_130 Hb_001878_060--Hb_000579_130 Hb_002739_120 Hb_002739_120 Hb_001878_060--Hb_002739_120 Hb_008165_020 Hb_008165_020 Hb_001878_060--Hb_008165_020 Hb_001085_080 Hb_001085_080 Hb_001878_060--Hb_001085_080 Hb_000205_280--Hb_000260_780 Hb_001159_030 Hb_001159_030 Hb_000205_280--Hb_001159_030 Hb_158845_060 Hb_158845_060 Hb_000205_280--Hb_158845_060 Hb_000784_080 Hb_000784_080 Hb_000205_280--Hb_000784_080 Hb_000054_040 Hb_000054_040 Hb_000205_280--Hb_000054_040 Hb_000671_080 Hb_000671_080 Hb_003849_220--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_003849_220--Hb_001257_100 Hb_000261_280 Hb_000261_280 Hb_003849_220--Hb_000261_280 Hb_000671_030 Hb_000671_030 Hb_003849_220--Hb_000671_030 Hb_005288_140 Hb_005288_140 Hb_003849_220--Hb_005288_140 Hb_003777_130 Hb_003777_130 Hb_003849_220--Hb_003777_130 Hb_028077_020--Hb_001103_090 Hb_000705_180 Hb_000705_180 Hb_028077_020--Hb_000705_180 Hb_001009_150 Hb_001009_150 Hb_028077_020--Hb_001009_150 Hb_001097_040 Hb_001097_040 Hb_028077_020--Hb_001097_040 Hb_005970_010 Hb_005970_010 Hb_028077_020--Hb_005970_010 Hb_003599_030--Hb_000705_180 Hb_003599_030--Hb_000671_080 Hb_003599_030--Hb_001257_100 Hb_001329_200 Hb_001329_200 Hb_003599_030--Hb_001329_200 Hb_009372_020 Hb_009372_020 Hb_003599_030--Hb_009372_020 Hb_009615_160 Hb_009615_160 Hb_003599_030--Hb_009615_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3179 17.4684 10.0998 20.2012 7.63333 5.11591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.26528 2.75038 2.73792 10.2191 9.61106

CAGE analysis