Hb_003506_020

Information

Type -
Description -
Location Contig3506: 22771-50857
Sequence    

Annotation

kegg
ID vvi:100252197
description uncharacterized LOC100252197
nr
ID XP_011024837.1
description PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
swissprot
ID Q94A79
description Protein DEFECTIVE IN MERISTEM SILENCING 3 OS=Arabidopsis thaliana GN=DMS3 PE=1 SV=1
trembl
ID A0A061G944
description Gamma-irradiation and mitomycin c induced 1, putative isoform 1 OS=Theobroma cacao GN=TCM_015420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36495: 22825-50687 , PASA_asmbl_36496: 45818-47375 , PASA_asmbl_36497: 43359-43649 , PASA_asmbl_36498: 26366-45333 , PASA_asmbl_36499: 41988-47305
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003506_020 0.0 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
2 Hb_000000_120 0.0720286851 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
3 Hb_000216_020 0.1018418165 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
4 Hb_005970_010 0.1029876195 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
5 Hb_002122_080 0.1047032984 - - -
6 Hb_002151_100 0.1085365978 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
7 Hb_028077_020 0.1144637426 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001675_320 0.1156452231 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
9 Hb_000056_280 0.1175146148 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_000371_060 0.1192733133 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
11 Hb_022250_150 0.1196230611 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
12 Hb_000649_120 0.1197406725 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_001259_120 0.1199306666 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
14 Hb_000072_020 0.1218569873 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
15 Hb_000133_090 0.1234011245 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
16 Hb_009646_010 0.1268750458 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
17 Hb_000220_080 0.1269879032 - - kinase, putative [Ricinus communis]
18 Hb_000059_130 0.1273418627 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
19 Hb_002005_030 0.1274112779 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
20 Hb_033363_010 0.1276030299 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003506_020 Hb_003506_020 Hb_000000_120 Hb_000000_120 Hb_003506_020--Hb_000000_120 Hb_000216_020 Hb_000216_020 Hb_003506_020--Hb_000216_020 Hb_005970_010 Hb_005970_010 Hb_003506_020--Hb_005970_010 Hb_002122_080 Hb_002122_080 Hb_003506_020--Hb_002122_080 Hb_002151_100 Hb_002151_100 Hb_003506_020--Hb_002151_100 Hb_028077_020 Hb_028077_020 Hb_003506_020--Hb_028077_020 Hb_000220_080 Hb_000220_080 Hb_000000_120--Hb_000220_080 Hb_000000_120--Hb_005970_010 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_002316_170 Hb_002316_170 Hb_000000_120--Hb_002316_170 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180 Hb_000059_130 Hb_000059_130 Hb_000216_020--Hb_000059_130 Hb_000371_060 Hb_000371_060 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_008667_060 Hb_008667_060 Hb_000216_020--Hb_008667_060 Hb_000069_780 Hb_000069_780 Hb_000216_020--Hb_000069_780 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_001097_040 Hb_001097_040 Hb_005970_010--Hb_001097_040 Hb_005970_010--Hb_028077_020 Hb_007576_200 Hb_007576_200 Hb_002122_080--Hb_007576_200 Hb_002122_080--Hb_000371_060 Hb_000302_200 Hb_000302_200 Hb_002122_080--Hb_000302_200 Hb_002122_080--Hb_000059_130 Hb_002122_080--Hb_000216_020 Hb_009646_010 Hb_009646_010 Hb_002151_100--Hb_009646_010 Hb_002235_310 Hb_002235_310 Hb_002151_100--Hb_002235_310 Hb_053575_020 Hb_053575_020 Hb_002151_100--Hb_053575_020 Hb_000056_280 Hb_000056_280 Hb_002151_100--Hb_000056_280 Hb_000649_120 Hb_000649_120 Hb_002151_100--Hb_000649_120 Hb_001103_090 Hb_001103_090 Hb_028077_020--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_028077_020--Hb_001675_320 Hb_000705_180 Hb_000705_180 Hb_028077_020--Hb_000705_180 Hb_001009_150 Hb_001009_150 Hb_028077_020--Hb_001009_150 Hb_028077_020--Hb_001097_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.31028 32.0201 10.0316 30.1394 8.57072 7.69642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63564 4.63017 3.67576 27.0702 13.4935

CAGE analysis