Hb_000056_280

Information

Type -
Description -
Location Contig56: 411630-413886
Sequence    

Annotation

kegg
ID rcu:RCOM_0836090
description sur2 hydroxylase/desaturase, putative (EC:1.14.13.72)
nr
ID XP_002522423.1
description sur2 hydroxylase/desaturase, putative [Ricinus communis]
swissprot
ID Q9AST3
description Sphinganine C(4)-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1
trembl
ID B9S8V4
description Sur2 hydroxylase/desaturase, putative OS=Ricinus communis GN=RCOM_0836090 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sphinganine c -monooxygenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48730: 411699-414067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_280 0.0 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
2 Hb_000805_190 0.0931540149 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
3 Hb_000465_260 0.1062372198 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
4 Hb_000072_020 0.1090690276 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
5 Hb_002151_100 0.1104106742 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
6 Hb_009646_010 0.1125013301 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
7 Hb_033363_010 0.11593541 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
8 Hb_003506_020 0.1175146148 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
9 Hb_000649_120 0.1176151914 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_000207_290 0.1254073411 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
11 Hb_004724_330 0.1259871017 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
12 Hb_000059_130 0.1277834909 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
13 Hb_008468_030 0.1283254824 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
14 Hb_000028_340 0.1300099429 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
15 Hb_033234_010 0.1338313769 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
16 Hb_000025_400 0.1338935849 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
17 Hb_000216_020 0.1352040526 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
18 Hb_002235_310 0.1365046502 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
19 Hb_000000_120 0.1366967188 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
20 Hb_000110_300 0.1379768166 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_280 Hb_000056_280 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000465_260 Hb_000465_260 Hb_000056_280--Hb_000465_260 Hb_000072_020 Hb_000072_020 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_000056_280--Hb_009646_010 Hb_033363_010 Hb_033363_010 Hb_000056_280--Hb_033363_010 Hb_000059_130 Hb_000059_130 Hb_000805_190--Hb_000059_130 Hb_000805_190--Hb_000072_020 Hb_002235_310 Hb_002235_310 Hb_000805_190--Hb_002235_310 Hb_000110_300 Hb_000110_300 Hb_000805_190--Hb_000110_300 Hb_000805_190--Hb_033363_010 Hb_000465_260--Hb_009646_010 Hb_004631_110 Hb_004631_110 Hb_000465_260--Hb_004631_110 Hb_001818_060 Hb_001818_060 Hb_000465_260--Hb_001818_060 Hb_000025_400 Hb_000025_400 Hb_000465_260--Hb_000025_400 Hb_000465_260--Hb_033363_010 Hb_000072_020--Hb_033363_010 Hb_000227_320 Hb_000227_320 Hb_000072_020--Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000072_020--Hb_003964_110 Hb_000072_020--Hb_002235_310 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_002151_100--Hb_009646_010 Hb_002151_100--Hb_002235_310 Hb_053575_020 Hb_053575_020 Hb_002151_100--Hb_053575_020 Hb_003506_020 Hb_003506_020 Hb_002151_100--Hb_003506_020 Hb_000649_120 Hb_000649_120 Hb_002151_100--Hb_000649_120 Hb_009646_010--Hb_000110_300 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_128589_010 Hb_128589_010 Hb_009646_010--Hb_128589_010 Hb_033363_010--Hb_000227_320 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.57353 46.9217 14.6007 40.4228 4.37052 7.2466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18343 4.79013 8.52332 31.8456 15.3724

CAGE analysis