Hb_053575_020

Information

Type -
Description -
Location Contig53575: 59083-69262
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18320g
description POPTRDRAFT_648812; hypothetical protein
nr
ID XP_012077730.1
description PREDICTED: RNA-binding protein 39 [Jatropha curcas]
swissprot
ID Q5RC80
description RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
trembl
ID A0A067KB07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13089 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna-binding protein 39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47570: 58497-69256 , PASA_asmbl_47571: 58494-69233 , PASA_asmbl_47572: 65324-69222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053575_020 0.0 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
2 Hb_011032_010 0.0850092992 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
3 Hb_003125_180 0.0918006297 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
4 Hb_000227_330 0.0927010882 - - Acyl-CoA synthetase [Ricinus communis]
5 Hb_000684_360 0.0945061633 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
6 Hb_002151_100 0.1068014286 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
7 Hb_000866_110 0.1075705858 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
8 Hb_002235_310 0.109801853 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
9 Hb_001006_010 0.1103329182 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_000019_170 0.1116371569 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
11 Hb_000702_060 0.1122822277 - - conserved hypothetical protein [Ricinus communis]
12 Hb_169051_010 0.1127470009 - - JHL06B08.1 [Jatropha curcas]
13 Hb_000125_180 0.1141487447 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
14 Hb_000157_070 0.1156070794 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
15 Hb_002851_010 0.1161287194 - - sugar transporter, putative [Ricinus communis]
16 Hb_005217_040 0.1179463607 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
17 Hb_000321_090 0.1220750861 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
18 Hb_000337_010 0.1234745087 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
19 Hb_012325_010 0.1248674405 - - hypothetical protein RCOM_0068670 [Ricinus communis]
20 Hb_029879_120 0.125970041 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_053575_020 Hb_053575_020 Hb_011032_010 Hb_011032_010 Hb_053575_020--Hb_011032_010 Hb_003125_180 Hb_003125_180 Hb_053575_020--Hb_003125_180 Hb_000227_330 Hb_000227_330 Hb_053575_020--Hb_000227_330 Hb_000684_360 Hb_000684_360 Hb_053575_020--Hb_000684_360 Hb_002151_100 Hb_002151_100 Hb_053575_020--Hb_002151_100 Hb_000866_110 Hb_000866_110 Hb_053575_020--Hb_000866_110 Hb_011032_010--Hb_003125_180 Hb_169051_010 Hb_169051_010 Hb_011032_010--Hb_169051_010 Hb_003058_200 Hb_003058_200 Hb_011032_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_011032_010--Hb_000674_010 Hb_002851_010 Hb_002851_010 Hb_011032_010--Hb_002851_010 Hb_003125_180--Hb_169051_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_003125_180--Hb_000674_010 Hb_003125_180--Hb_003058_200 Hb_012325_010 Hb_012325_010 Hb_000227_330--Hb_012325_010 Hb_000125_180 Hb_000125_180 Hb_000227_330--Hb_000125_180 Hb_000317_350 Hb_000317_350 Hb_000227_330--Hb_000317_350 Hb_000205_250 Hb_000205_250 Hb_000227_330--Hb_000205_250 Hb_000271_120 Hb_000271_120 Hb_000227_330--Hb_000271_120 Hb_000684_360--Hb_003125_180 Hb_000684_360--Hb_169051_010 Hb_000157_070 Hb_000157_070 Hb_000684_360--Hb_000157_070 Hb_000702_060 Hb_000702_060 Hb_000684_360--Hb_000702_060 Hb_000684_360--Hb_029879_120 Hb_009646_010 Hb_009646_010 Hb_002151_100--Hb_009646_010 Hb_002235_310 Hb_002235_310 Hb_002151_100--Hb_002235_310 Hb_003506_020 Hb_003506_020 Hb_002151_100--Hb_003506_020 Hb_000056_280 Hb_000056_280 Hb_002151_100--Hb_000056_280 Hb_000649_120 Hb_000649_120 Hb_002151_100--Hb_000649_120 Hb_000866_110--Hb_002235_310 Hb_000866_110--Hb_000205_250 Hb_000866_110--Hb_000125_180 Hb_001006_010 Hb_001006_010 Hb_000866_110--Hb_001006_010 Hb_011925_020 Hb_011925_020 Hb_000866_110--Hb_011925_020 Hb_000866_110--Hb_000271_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79374 32.4069 11.9789 29.3638 7.36522 9.02941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.14824 5.60464 6.7703 51.4761 30.7601

CAGE analysis