Hb_169051_010

Information

Type -
Description -
Location Contig169051: 429-4442
Sequence    

Annotation

kegg
ID pxb:103953205
description putative calcium-transporting ATPase 11, plasma membrane-type
nr
ID BAJ53200.1
description JHL06B08.1 [Jatropha curcas]
swissprot
ID Q9M2L4
description Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=1 SV=1
trembl
ID E6NU90
description JHL06B08.1 protein (Fragment) OS=Jatropha curcas GN=JHL06B08.1 PE=4 SV=1
Gene Ontology
ID GO:0000166
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169051_010 0.0 - - JHL06B08.1 [Jatropha curcas]
2 Hb_003125_180 0.0776969252 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
3 Hb_011032_010 0.0893835827 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_000684_360 0.097931557 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
5 Hb_146510_010 0.0990394596 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
6 Hb_001322_180 0.1038983203 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
7 Hb_053575_020 0.1127470009 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
8 Hb_000000_120 0.1163069238 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
9 Hb_000674_010 0.1169866975 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
10 Hb_003058_200 0.1177888157 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
11 Hb_001006_010 0.1182111287 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
12 Hb_029879_120 0.1184888004 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000157_070 0.1241073125 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
14 Hb_005217_040 0.1256820751 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
15 Hb_000321_090 0.1282590251 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
16 Hb_000019_170 0.1298036274 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
17 Hb_001702_050 0.1302082766 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
18 Hb_003506_020 0.130223539 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
19 Hb_005000_090 0.1305620654 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
20 Hb_002851_010 0.1312949623 - - sugar transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_169051_010 Hb_169051_010 Hb_003125_180 Hb_003125_180 Hb_169051_010--Hb_003125_180 Hb_011032_010 Hb_011032_010 Hb_169051_010--Hb_011032_010 Hb_000684_360 Hb_000684_360 Hb_169051_010--Hb_000684_360 Hb_146510_010 Hb_146510_010 Hb_169051_010--Hb_146510_010 Hb_001322_180 Hb_001322_180 Hb_169051_010--Hb_001322_180 Hb_053575_020 Hb_053575_020 Hb_169051_010--Hb_053575_020 Hb_003125_180--Hb_011032_010 Hb_000019_170 Hb_000019_170 Hb_003125_180--Hb_000019_170 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_000674_010 Hb_000674_010 Hb_003125_180--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_003125_180--Hb_003058_200 Hb_011032_010--Hb_053575_020 Hb_011032_010--Hb_003058_200 Hb_011032_010--Hb_000674_010 Hb_002851_010 Hb_002851_010 Hb_011032_010--Hb_002851_010 Hb_000684_360--Hb_003125_180 Hb_000684_360--Hb_053575_020 Hb_000157_070 Hb_000157_070 Hb_000684_360--Hb_000157_070 Hb_000702_060 Hb_000702_060 Hb_000684_360--Hb_000702_060 Hb_000684_360--Hb_029879_120 Hb_014720_030 Hb_014720_030 Hb_146510_010--Hb_014720_030 Hb_001446_060 Hb_001446_060 Hb_146510_010--Hb_001446_060 Hb_146510_010--Hb_003125_180 Hb_000000_120 Hb_000000_120 Hb_146510_010--Hb_000000_120 Hb_001898_020 Hb_001898_020 Hb_146510_010--Hb_001898_020 Hb_000321_090 Hb_000321_090 Hb_001322_180--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_001322_180--Hb_000049_250 Hb_006829_100 Hb_006829_100 Hb_001322_180--Hb_006829_100 Hb_000834_230 Hb_000834_230 Hb_001322_180--Hb_000834_230 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_002027_190 Hb_002027_190 Hb_001322_180--Hb_002027_190 Hb_053575_020--Hb_003125_180 Hb_000227_330 Hb_000227_330 Hb_053575_020--Hb_000227_330 Hb_002151_100 Hb_002151_100 Hb_053575_020--Hb_002151_100 Hb_000866_110 Hb_000866_110 Hb_053575_020--Hb_000866_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.32944 11.1823 3.74461 9.88218 3.03611 4.28895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07613 0.947196 0.971184 14.9736 9.58806

CAGE analysis