Hb_000227_330

Information

Type -
Description -
Location Contig227: 280860-291143
Sequence    

Annotation

kegg
ID rcu:RCOM_0914000
description Acyl-CoA synthetase (EC:6.2.1.3)
nr
ID XP_002517212.1
description Acyl-CoA synthetase [Ricinus communis]
swissprot
ID Q8LKS5
description Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2
trembl
ID A1X860
description ACS2 OS=Ricinus communis GN=RCOM_0914000 PE=2 SV=1
Gene Ontology
ID GO:0004467
description long chain acyl- synthetase peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23640: 281028-291198 , PASA_asmbl_23642: 284133-284335 , PASA_asmbl_23643: 284965-285189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_330 0.0 - - Acyl-CoA synthetase [Ricinus communis]
2 Hb_012325_010 0.0817396345 - - hypothetical protein RCOM_0068670 [Ricinus communis]
3 Hb_053575_020 0.0927010882 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
4 Hb_000125_180 0.0984357548 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
5 Hb_000317_350 0.1016661785 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
6 Hb_000205_250 0.1045172708 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
7 Hb_000271_120 0.1063194981 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
8 Hb_000866_110 0.1094715724 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
9 Hb_001159_020 0.1123192018 - - -
10 Hb_002235_310 0.1141998311 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
11 Hb_000321_090 0.1151788381 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
12 Hb_011853_010 0.115533009 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
13 Hb_006916_110 0.1168216086 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
14 Hb_000684_360 0.116863235 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
15 Hb_001006_010 0.1169138017 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_000331_510 0.1189065588 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
17 Hb_011925_020 0.1236642424 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_000049_250 0.1239997536 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
19 Hb_004586_090 0.1244786767 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
20 Hb_000157_070 0.1261051817 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]

Gene co-expression network

sample Hb_000227_330 Hb_000227_330 Hb_012325_010 Hb_012325_010 Hb_000227_330--Hb_012325_010 Hb_053575_020 Hb_053575_020 Hb_000227_330--Hb_053575_020 Hb_000125_180 Hb_000125_180 Hb_000227_330--Hb_000125_180 Hb_000317_350 Hb_000317_350 Hb_000227_330--Hb_000317_350 Hb_000205_250 Hb_000205_250 Hb_000227_330--Hb_000205_250 Hb_000271_120 Hb_000271_120 Hb_000227_330--Hb_000271_120 Hb_006916_110 Hb_006916_110 Hb_012325_010--Hb_006916_110 Hb_000342_050 Hb_000342_050 Hb_012325_010--Hb_000342_050 Hb_012325_010--Hb_000125_180 Hb_000157_070 Hb_000157_070 Hb_012325_010--Hb_000157_070 Hb_020805_180 Hb_020805_180 Hb_012325_010--Hb_020805_180 Hb_011032_010 Hb_011032_010 Hb_053575_020--Hb_011032_010 Hb_003125_180 Hb_003125_180 Hb_053575_020--Hb_003125_180 Hb_000684_360 Hb_000684_360 Hb_053575_020--Hb_000684_360 Hb_002151_100 Hb_002151_100 Hb_053575_020--Hb_002151_100 Hb_000866_110 Hb_000866_110 Hb_053575_020--Hb_000866_110 Hb_005181_050 Hb_005181_050 Hb_000125_180--Hb_005181_050 Hb_002235_310 Hb_002235_310 Hb_000125_180--Hb_002235_310 Hb_000125_180--Hb_000866_110 Hb_011925_020 Hb_011925_020 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_000125_180--Hb_000080_110 Hb_028960_030 Hb_028960_030 Hb_000317_350--Hb_028960_030 Hb_000049_250 Hb_000049_250 Hb_000317_350--Hb_000049_250 Hb_005333_050 Hb_005333_050 Hb_000317_350--Hb_005333_050 Hb_000321_090 Hb_000321_090 Hb_000317_350--Hb_000321_090 Hb_000009_030 Hb_000009_030 Hb_000317_350--Hb_000009_030 Hb_000317_350--Hb_020805_180 Hb_000205_250--Hb_002235_310 Hb_000205_250--Hb_000866_110 Hb_000205_250--Hb_000271_120 Hb_000205_250--Hb_011925_020 Hb_000205_250--Hb_000125_180 Hb_001956_060 Hb_001956_060 Hb_000205_250--Hb_001956_060 Hb_000271_120--Hb_011925_020 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120 Hb_001006_010 Hb_001006_010 Hb_000271_120--Hb_001006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5924 8.44897 5.12835 5.97653 1.85357 1.49138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53696 2.11301 2.10331 13.9852 8.44373

CAGE analysis