Hb_006916_110

Information

Type -
Description -
Location Contig6916: 118467-124010
Sequence    

Annotation

kegg
ID pop:POPTR_0004s11710g
description POPTRDRAFT_1076440; hypothetical protein
nr
ID XP_012088060.1
description PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9SRU7
description Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3
trembl
ID A0A067JND0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25589 PE=4 SV=1
Gene Ontology
ID GO:0003723
description probable trna (guanine -n )-dimethyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54423: 118733-124039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_110 0.0 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
2 Hb_012325_010 0.0811792549 - - hypothetical protein RCOM_0068670 [Ricinus communis]
3 Hb_042474_010 0.0874954922 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
4 Hb_021576_010 0.0891611367 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
5 Hb_000342_050 0.0906960713 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
6 Hb_000209_100 0.0924957281 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
7 Hb_000190_090 0.0934878536 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
8 Hb_000787_200 0.0945935856 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000088_270 0.0958244669 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
10 Hb_082741_010 0.0976364969 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
11 Hb_001159_020 0.098007899 - - -
12 Hb_010872_050 0.099247955 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
13 Hb_012760_040 0.0993144174 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
14 Hb_004096_110 0.1007490313 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
15 Hb_000535_050 0.1015972331 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
16 Hb_000345_320 0.1022177377 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
17 Hb_011674_040 0.1024570076 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
18 Hb_011224_160 0.10274512 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
19 Hb_012022_080 0.1032520202 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_003777_290 0.1032853805 - - polypyrimidine tract binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006916_110 Hb_006916_110 Hb_012325_010 Hb_012325_010 Hb_006916_110--Hb_012325_010 Hb_042474_010 Hb_042474_010 Hb_006916_110--Hb_042474_010 Hb_021576_010 Hb_021576_010 Hb_006916_110--Hb_021576_010 Hb_000342_050 Hb_000342_050 Hb_006916_110--Hb_000342_050 Hb_000209_100 Hb_000209_100 Hb_006916_110--Hb_000209_100 Hb_000190_090 Hb_000190_090 Hb_006916_110--Hb_000190_090 Hb_000227_330 Hb_000227_330 Hb_012325_010--Hb_000227_330 Hb_012325_010--Hb_000342_050 Hb_000125_180 Hb_000125_180 Hb_012325_010--Hb_000125_180 Hb_000157_070 Hb_000157_070 Hb_012325_010--Hb_000157_070 Hb_020805_180 Hb_020805_180 Hb_012325_010--Hb_020805_180 Hb_012760_040 Hb_012760_040 Hb_042474_010--Hb_012760_040 Hb_042474_010--Hb_000190_090 Hb_004880_150 Hb_004880_150 Hb_042474_010--Hb_004880_150 Hb_001221_020 Hb_001221_020 Hb_042474_010--Hb_001221_020 Hb_016347_010 Hb_016347_010 Hb_042474_010--Hb_016347_010 Hb_000979_220 Hb_000979_220 Hb_021576_010--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_021576_010--Hb_004096_110 Hb_003777_290 Hb_003777_290 Hb_021576_010--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_021576_010--Hb_000327_250 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180 Hb_004837_280 Hb_004837_280 Hb_000342_050--Hb_004837_280 Hb_001811_170 Hb_001811_170 Hb_000342_050--Hb_001811_170 Hb_001226_130 Hb_001226_130 Hb_000342_050--Hb_001226_130 Hb_000787_200 Hb_000787_200 Hb_000342_050--Hb_000787_200 Hb_001587_030 Hb_001587_030 Hb_000342_050--Hb_001587_030 Hb_000152_700 Hb_000152_700 Hb_000342_050--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_000209_100--Hb_001642_070 Hb_000535_050 Hb_000535_050 Hb_000209_100--Hb_000535_050 Hb_011925_020 Hb_011925_020 Hb_000209_100--Hb_011925_020 Hb_005074_020 Hb_005074_020 Hb_000209_100--Hb_005074_020 Hb_000209_100--Hb_016347_010 Hb_012022_080 Hb_012022_080 Hb_000190_090--Hb_012022_080 Hb_000190_090--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_000190_090--Hb_011224_160 Hb_000190_090--Hb_021576_010 Hb_000190_090--Hb_016347_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10217 6.11873 5.65407 6.45862 1.98837 2.32169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22538 4.35091 2.82642 11.8993 6.47521

CAGE analysis